Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review
<p dir="ltr">Precision medicine has become a central focus in breast cancer management, advancing beyond conventional methods to deliver more precise and individualized therapies. Traditionally, histopathology images have been used primarily for diagnostic purposes; however, they are...
محفوظ في:
| المؤلف الرئيسي: | |
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| مؤلفون آخرون: | , , |
| منشور في: |
2025
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| الموضوعات: | |
| الوسوم: |
إضافة وسم
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| _version_ | 1864513524566327296 |
|---|---|
| author | Suchithra Kunhoth (5178125) |
| author2 | Somaya Al-maadeed (14151810) Younes Akbari (16303286) Rafif Mahmood Al Saady (22330120) |
| author2_role | author author author |
| author_facet | Suchithra Kunhoth (5178125) Somaya Al-maadeed (14151810) Younes Akbari (16303286) Rafif Mahmood Al Saady (22330120) |
| author_role | author |
| dc.creator.none.fl_str_mv | Suchithra Kunhoth (5178125) Somaya Al-maadeed (14151810) Younes Akbari (16303286) Rafif Mahmood Al Saady (22330120) |
| dc.date.none.fl_str_mv | 2025-09-01T00:00:00Z |
| dc.identifier.none.fl_str_mv | 10.1007/s11831-025-10374-w |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/journal_contribution/Computational_Methods_for_Breast_Cancer_Molecular_Profiling_using_Routine_Histopathology_A_Review/31056307 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Biomedical and clinical sciences Oncology and carcinogenesis Engineering Health sciences Health services and systems Artificial intelligence Precision Medicine Breast Cancer Digital Pathology Artificial Intelligence (AI) Histopathology Images |
| dc.title.none.fl_str_mv | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review |
| dc.type.none.fl_str_mv | Text Journal contribution info:eu-repo/semantics/publishedVersion text contribution to journal |
| description | <p dir="ltr">Precision medicine has become a central focus in breast cancer management, advancing beyond conventional methods to deliver more precise and individualized therapies. Traditionally, histopathology images have been used primarily for diagnostic purposes; however, they are now recognized for their potential in molecular profiling, which provides deeper insights into cancer prognosis and treatment response. Recent advancements in artificial intelligence (AI) have enabled digital pathology to analyze histopathologic images for both targeted molecular and broader omic biomarkers, marking a pivotal step in personalized cancer care. These technologies offer the capability to extract various biomarkers such as genomic, transcriptomic, proteomic, and metabolomic markers directly from the routine hematoxylin and eosin (H&E) stained images, which can support treatment decisions without the need for costly molecular assays. In this work, we provide a comprehensive review of AI-driven techniques for biomarker detection, with a focus on diverse omic biomarkers that allow novel biomarker discovery. Additionally, we analyze the major challenges faced in this field for robust algorithm development. These challenges highlight areas where further research is essential to bridge the gap between AI research and clinical application.</p><h2 dir="ltr">Other Information</h2><p dir="ltr">Published in: Archives of Computational Methods in Engineering<br>License: <a href="https://creativecommons.org/licenses/by/4.0" target="_blank">https://creativecommons.org/licenses/by/4.0</a><br>See article on publisher's website: <a href="https://dx.doi.org/10.1007/s11831-025-10374-w" target="_blank">https://dx.doi.org/10.1007/s11831-025-10374-w</a></p> |
| eu_rights_str_mv | openAccess |
| id | Manara2_05d318d3244706e28e3482c9cc4cc975 |
| identifier_str_mv | 10.1007/s11831-025-10374-w |
| network_acronym_str | Manara2 |
| network_name_str | Manara2 |
| oai_identifier_str | oai:figshare.com:article/31056307 |
| publishDate | 2025 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A ReviewSuchithra Kunhoth (5178125)Somaya Al-maadeed (14151810)Younes Akbari (16303286)Rafif Mahmood Al Saady (22330120)Biomedical and clinical sciencesOncology and carcinogenesisEngineeringHealth sciencesHealth services and systemsArtificial intelligencePrecision MedicineBreast CancerDigital PathologyArtificial Intelligence (AI)Histopathology Images<p dir="ltr">Precision medicine has become a central focus in breast cancer management, advancing beyond conventional methods to deliver more precise and individualized therapies. Traditionally, histopathology images have been used primarily for diagnostic purposes; however, they are now recognized for their potential in molecular profiling, which provides deeper insights into cancer prognosis and treatment response. Recent advancements in artificial intelligence (AI) have enabled digital pathology to analyze histopathologic images for both targeted molecular and broader omic biomarkers, marking a pivotal step in personalized cancer care. These technologies offer the capability to extract various biomarkers such as genomic, transcriptomic, proteomic, and metabolomic markers directly from the routine hematoxylin and eosin (H&E) stained images, which can support treatment decisions without the need for costly molecular assays. In this work, we provide a comprehensive review of AI-driven techniques for biomarker detection, with a focus on diverse omic biomarkers that allow novel biomarker discovery. Additionally, we analyze the major challenges faced in this field for robust algorithm development. These challenges highlight areas where further research is essential to bridge the gap between AI research and clinical application.</p><h2 dir="ltr">Other Information</h2><p dir="ltr">Published in: Archives of Computational Methods in Engineering<br>License: <a href="https://creativecommons.org/licenses/by/4.0" target="_blank">https://creativecommons.org/licenses/by/4.0</a><br>See article on publisher's website: <a href="https://dx.doi.org/10.1007/s11831-025-10374-w" target="_blank">https://dx.doi.org/10.1007/s11831-025-10374-w</a></p>2025-09-01T00:00:00ZTextJournal contributioninfo:eu-repo/semantics/publishedVersiontextcontribution to journal10.1007/s11831-025-10374-whttps://figshare.com/articles/journal_contribution/Computational_Methods_for_Breast_Cancer_Molecular_Profiling_using_Routine_Histopathology_A_Review/31056307CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/310563072025-09-01T00:00:00Z |
| spellingShingle | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review Suchithra Kunhoth (5178125) Biomedical and clinical sciences Oncology and carcinogenesis Engineering Health sciences Health services and systems Artificial intelligence Precision Medicine Breast Cancer Digital Pathology Artificial Intelligence (AI) Histopathology Images |
| status_str | publishedVersion |
| title | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review |
| title_full | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review |
| title_fullStr | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review |
| title_full_unstemmed | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review |
| title_short | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review |
| title_sort | Computational Methods for Breast Cancer Molecular Profiling using Routine Histopathology: A Review |
| topic | Biomedical and clinical sciences Oncology and carcinogenesis Engineering Health sciences Health services and systems Artificial intelligence Precision Medicine Breast Cancer Digital Pathology Artificial Intelligence (AI) Histopathology Images |