Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology
<h2>Background</h2> <p>Next-generation sequencing technology has allowed for the rapid development of microsatellites, neutral polymorphic markers that can be used for the analysis of population structure.</p> <h2>Methods and Results</h2> <p>In this study, w...
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2022
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| _version_ | 1864513568257343488 |
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| author | Lina Ahmed (3342308) |
| author2 | Yousef Al-Najjar (14147835) Emily R. A. Cramer (14147838) Gaurav Thareja (459188) Karsten Suhre (67967) Kuei-Chiu Chen (14108854) |
| author2_role | author author author author author |
| author_facet | Lina Ahmed (3342308) Yousef Al-Najjar (14147835) Emily R. A. Cramer (14147838) Gaurav Thareja (459188) Karsten Suhre (67967) Kuei-Chiu Chen (14108854) |
| author_role | author |
| dc.creator.none.fl_str_mv | Lina Ahmed (3342308) Yousef Al-Najjar (14147835) Emily R. A. Cramer (14147838) Gaurav Thareja (459188) Karsten Suhre (67967) Kuei-Chiu Chen (14108854) |
| dc.date.none.fl_str_mv | 2022-11-22T21:11:16Z |
| dc.identifier.none.fl_str_mv | 10.1007/s11033-022-07804-4 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/journal_contribution/Development_and_characterization_of_microsatellite_primers_for_Triops_granarius_Branchiopoda_Notostraca_using_MiSeq_technology/21592365 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Genetics Medicinal and biomolecular chemistry Genetics Molecular Biology General Medicine |
| dc.title.none.fl_str_mv | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology |
| dc.type.none.fl_str_mv | Text Journal contribution info:eu-repo/semantics/publishedVersion text contribution to journal |
| description | <h2>Background</h2> <p>Next-generation sequencing technology has allowed for the rapid development of microsatellites, neutral polymorphic markers that can be used for the analysis of population structure.</p> <h2>Methods and Results</h2> <p>In this study, we performed whole-genome sequencing using the Illumina MiSeq system and de novo assembly to design microsatellite primers for Triops granarius populations in Qatar. The developed microsatellites are suitable for future studies of genetic structuring among geographically isolated freshwater pools. A total of 23 different primer pairs produced typical microsatellite results, with each pair successfully amplified in up to 40 individuals. Only five of the loci produced a significant departure from Hardy-Weinberg equilibrium.</p> <h2>Conclusions</h2> <p>Some of the underlying mechanisms regarding the few loci that deviated from HWE may be further investigated to determine the source of deviation. As T. granarius is the most widely distributed species of the family, the development of these molecular markers would be useful for conducting population genetics and biogeographical studies broadly.</p><h2>Other Information</h2> <p> Published in: Molecular Biology Reports<br> License: <a href="https://creativecommons.org/licenses/by/4.0" target="_blank">https://creativecommons.org/licenses/by/4.0</a><br>See article on publisher's website: <a href="http://dx.doi.org/10.1007/s11033-022-07804-4" target="_blank">http://dx.doi.org/10.1007/s11033-022-07804-4</a></p> |
| eu_rights_str_mv | openAccess |
| id | Manara2_16fa9c3aed4a09656176d4136963aa02 |
| identifier_str_mv | 10.1007/s11033-022-07804-4 |
| network_acronym_str | Manara2 |
| network_name_str | Manara2 |
| oai_identifier_str | oai:figshare.com:article/21592365 |
| publishDate | 2022 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technologyLina Ahmed (3342308)Yousef Al-Najjar (14147835)Emily R. A. Cramer (14147838)Gaurav Thareja (459188)Karsten Suhre (67967)Kuei-Chiu Chen (14108854)GeneticsMedicinal and biomolecular chemistryGeneticsMolecular BiologyGeneral Medicine<h2>Background</h2> <p>Next-generation sequencing technology has allowed for the rapid development of microsatellites, neutral polymorphic markers that can be used for the analysis of population structure.</p> <h2>Methods and Results</h2> <p>In this study, we performed whole-genome sequencing using the Illumina MiSeq system and de novo assembly to design microsatellite primers for Triops granarius populations in Qatar. The developed microsatellites are suitable for future studies of genetic structuring among geographically isolated freshwater pools. A total of 23 different primer pairs produced typical microsatellite results, with each pair successfully amplified in up to 40 individuals. Only five of the loci produced a significant departure from Hardy-Weinberg equilibrium.</p> <h2>Conclusions</h2> <p>Some of the underlying mechanisms regarding the few loci that deviated from HWE may be further investigated to determine the source of deviation. As T. granarius is the most widely distributed species of the family, the development of these molecular markers would be useful for conducting population genetics and biogeographical studies broadly.</p><h2>Other Information</h2> <p> Published in: Molecular Biology Reports<br> License: <a href="https://creativecommons.org/licenses/by/4.0" target="_blank">https://creativecommons.org/licenses/by/4.0</a><br>See article on publisher's website: <a href="http://dx.doi.org/10.1007/s11033-022-07804-4" target="_blank">http://dx.doi.org/10.1007/s11033-022-07804-4</a></p>2022-11-22T21:11:16ZTextJournal contributioninfo:eu-repo/semantics/publishedVersiontextcontribution to journal10.1007/s11033-022-07804-4https://figshare.com/articles/journal_contribution/Development_and_characterization_of_microsatellite_primers_for_Triops_granarius_Branchiopoda_Notostraca_using_MiSeq_technology/21592365CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/215923652022-11-22T21:11:16Z |
| spellingShingle | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology Lina Ahmed (3342308) Genetics Medicinal and biomolecular chemistry Genetics Molecular Biology General Medicine |
| status_str | publishedVersion |
| title | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology |
| title_full | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology |
| title_fullStr | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology |
| title_full_unstemmed | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology |
| title_short | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology |
| title_sort | Development and characterization of microsatellite primers for Triops granarius (Branchiopoda: Notostraca) using MiSeq technology |
| topic | Genetics Medicinal and biomolecular chemistry Genetics Molecular Biology General Medicine |