Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs
<div><p>Somatic cells are reprogrammed with reprogramming factors to generate induced pluripotent stem cells (iPSCs), offering a promising future for disease modeling and treatment by overcoming the limitations of embryonic stem cells. However, this process remains inefficient since only...
محفوظ في:
| المؤلف الرئيسي: | |
|---|---|
| مؤلفون آخرون: | , , , |
| منشور في: |
2022
|
| الموضوعات: | |
| الوسوم: |
إضافة وسم
لا توجد وسوم, كن أول من يضع وسما على هذه التسجيلة!
|
| _version_ | 1864513519717711872 |
|---|---|
| author | Salam Salloum-Asfar (656363) |
| author2 | Sara A. Abdulla (13902015) Rowaida Z. Taha (8854754) I. Richard Thompson (4278694) Mohamed M. Emara (9913215) |
| author2_role | author author author author |
| author_facet | Salam Salloum-Asfar (656363) Sara A. Abdulla (13902015) Rowaida Z. Taha (8854754) I. Richard Thompson (4278694) Mohamed M. Emara (9913215) |
| author_role | author |
| dc.creator.none.fl_str_mv | Salam Salloum-Asfar (656363) Sara A. Abdulla (13902015) Rowaida Z. Taha (8854754) I. Richard Thompson (4278694) Mohamed M. Emara (9913215) |
| dc.date.none.fl_str_mv | 2022-11-29T03:00:00Z |
| dc.identifier.none.fl_str_mv | 10.3390/cells11233833 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/journal_contribution/Combined_Noncoding_RNA-mRNA_Regulomics_Signature_in_Reprogramming_and_Pluripotency_in_iPSCs/25514032 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Biomedical and clinical sciences Cardiovascular medicine and haematology noncoding RNAs miRNAs piRNAs snoRNAs iPSCs reprogramming pluripotency differentiation |
| dc.title.none.fl_str_mv | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs |
| dc.type.none.fl_str_mv | Text Journal contribution info:eu-repo/semantics/publishedVersion text contribution to journal |
| description | <div><p>Somatic cells are reprogrammed with reprogramming factors to generate induced pluripotent stem cells (iPSCs), offering a promising future for disease modeling and treatment by overcoming the limitations of embryonic stem cells. However, this process remains inefficient since only a small percentage of transfected cells can undergo full reprogramming. Introducing miRNAs, such as miR-294 and miR302/3667, with reprogramming factors, has shown to increase iPSC colony formation. Previously, we identified five transcription factors, GBX2, NANOGP8, SP8, PEG3, and ZIC1, which may boost iPSC generation. In this study, we performed quantitative miRNAome and small RNA-seq sequencing and applied our previously identified transcriptome to identify the potential miRNA–mRNA regulomics and regulatory network of other ncRNAs. From each fibroblast (N = 4), three iPSC clones were examined (N = 12). iPSCs and original fibroblasts expressed miRNA clusters differently and miRNA clusters were compared to mRNA hits. Moreover, miRNA, piRNA, and snoRNAs expression profiles in iPSCs and original fibroblasts were assessed to identify the potential role of ncRNAs in enhancing iPSC generation, pluripotency, and differentiation. Decreased levels of let-7a-5p showed an increase of SP8 as described previously. Remarkably, the targets of identifier miRNAs were grouped into pluripotency canonical pathways, on stemness, cellular development, growth and proliferation, cellular assembly, and organization of iPSCs.</p><p> </p></div><h2>Other Information</h2> <p> Published in: Cells<br> License: <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">https://creativecommons.org/licenses/by/4.0/</a><br>See article on publisher's website: <a href="https://dx.doi.org/10.3390/cells11233833" target="_blank">https://dx.doi.org/10.3390/cells11233833</a></p> |
| eu_rights_str_mv | openAccess |
| id | Manara2_53d727e1b6f33c84ab98860d2f779c00 |
| identifier_str_mv | 10.3390/cells11233833 |
| network_acronym_str | Manara2 |
| network_name_str | Manara2 |
| oai_identifier_str | oai:figshare.com:article/25514032 |
| publishDate | 2022 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCsSalam Salloum-Asfar (656363)Sara A. Abdulla (13902015)Rowaida Z. Taha (8854754)I. Richard Thompson (4278694)Mohamed M. Emara (9913215)Biomedical and clinical sciencesCardiovascular medicine and haematologynoncoding RNAsmiRNAspiRNAssnoRNAsiPSCsreprogrammingpluripotencydifferentiation<div><p>Somatic cells are reprogrammed with reprogramming factors to generate induced pluripotent stem cells (iPSCs), offering a promising future for disease modeling and treatment by overcoming the limitations of embryonic stem cells. However, this process remains inefficient since only a small percentage of transfected cells can undergo full reprogramming. Introducing miRNAs, such as miR-294 and miR302/3667, with reprogramming factors, has shown to increase iPSC colony formation. Previously, we identified five transcription factors, GBX2, NANOGP8, SP8, PEG3, and ZIC1, which may boost iPSC generation. In this study, we performed quantitative miRNAome and small RNA-seq sequencing and applied our previously identified transcriptome to identify the potential miRNA–mRNA regulomics and regulatory network of other ncRNAs. From each fibroblast (N = 4), three iPSC clones were examined (N = 12). iPSCs and original fibroblasts expressed miRNA clusters differently and miRNA clusters were compared to mRNA hits. Moreover, miRNA, piRNA, and snoRNAs expression profiles in iPSCs and original fibroblasts were assessed to identify the potential role of ncRNAs in enhancing iPSC generation, pluripotency, and differentiation. Decreased levels of let-7a-5p showed an increase of SP8 as described previously. Remarkably, the targets of identifier miRNAs were grouped into pluripotency canonical pathways, on stemness, cellular development, growth and proliferation, cellular assembly, and organization of iPSCs.</p><p> </p></div><h2>Other Information</h2> <p> Published in: Cells<br> License: <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">https://creativecommons.org/licenses/by/4.0/</a><br>See article on publisher's website: <a href="https://dx.doi.org/10.3390/cells11233833" target="_blank">https://dx.doi.org/10.3390/cells11233833</a></p>2022-11-29T03:00:00ZTextJournal contributioninfo:eu-repo/semantics/publishedVersiontextcontribution to journal10.3390/cells11233833https://figshare.com/articles/journal_contribution/Combined_Noncoding_RNA-mRNA_Regulomics_Signature_in_Reprogramming_and_Pluripotency_in_iPSCs/25514032CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/255140322022-11-29T03:00:00Z |
| spellingShingle | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs Salam Salloum-Asfar (656363) Biomedical and clinical sciences Cardiovascular medicine and haematology noncoding RNAs miRNAs piRNAs snoRNAs iPSCs reprogramming pluripotency differentiation |
| status_str | publishedVersion |
| title | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs |
| title_full | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs |
| title_fullStr | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs |
| title_full_unstemmed | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs |
| title_short | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs |
| title_sort | Combined Noncoding RNA-mRNA Regulomics Signature in Reprogramming and Pluripotency in iPSCs |
| topic | Biomedical and clinical sciences Cardiovascular medicine and haematology noncoding RNAs miRNAs piRNAs snoRNAs iPSCs reprogramming pluripotency differentiation |