The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere
<p dir="ltr">The date palm (<i>Phoenix dactylifera</i>) is an important cultivated crop in arid areas. Here, we studied the effect of plant genotype and type of fertilizers on the eukaryotic community structures of the date palm rhizosphere. Samples were collected from on...
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2024
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| _version_ | 1864513545496952832 |
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| author | Sara H. Al-Hadidi (17821196) |
| author2 | Dana A. Abumaali (17821193) Talaat Ahmed (11482993) Amer Fayad Al-khis (17821199) Sowaid Ali Al-Malki (17821202) Mahmoud Yaish (3855586) Hafeez Ur Rahim (21347972) Muhammad Fasih Khalid (10652246) Hassan Hassan (3240549) Juha M. Alatalo (2931234) |
| author2_role | author author author author author author author author author |
| author_facet | Sara H. Al-Hadidi (17821196) Dana A. Abumaali (17821193) Talaat Ahmed (11482993) Amer Fayad Al-khis (17821199) Sowaid Ali Al-Malki (17821202) Mahmoud Yaish (3855586) Hafeez Ur Rahim (21347972) Muhammad Fasih Khalid (10652246) Hassan Hassan (3240549) Juha M. Alatalo (2931234) |
| author_role | author |
| dc.creator.none.fl_str_mv | Sara H. Al-Hadidi (17821196) Dana A. Abumaali (17821193) Talaat Ahmed (11482993) Amer Fayad Al-khis (17821199) Sowaid Ali Al-Malki (17821202) Mahmoud Yaish (3855586) Hafeez Ur Rahim (21347972) Muhammad Fasih Khalid (10652246) Hassan Hassan (3240549) Juha M. Alatalo (2931234) |
| dc.date.none.fl_str_mv | 2024-01-30T09:00:00Z |
| dc.identifier.none.fl_str_mv | 10.1007/s10725-024-01121-5 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/journal_contribution/The_effect_of_type_and_combination_of_fertilizers_on_eukaryotic_microbiome_of_date_palm_rhizosphere/29445965 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Agricultural, veterinary and food sciences Agriculture, land and farm management Environmental sciences Soil sciences Fertilizer treatment Fungi High-throughput sequencing Microbiome Phoenix dactylifera Protists Rhizosphere |
| dc.title.none.fl_str_mv | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere |
| dc.type.none.fl_str_mv | Text Journal contribution info:eu-repo/semantics/publishedVersion text contribution to journal |
| description | <p dir="ltr">The date palm (<i>Phoenix dactylifera</i>) is an important cultivated crop in arid areas. Here, we studied the effect of plant genotype and type of fertilizers on the eukaryotic community structures of the date palm rhizosphere. Samples were collected from one wild population, five cultivars from two farms, and a factorial fertilizer experiment (organic, chemical, and biofertilizer) in Qatar. The eukaryotic communities were sequenced using a next-generation sequencing method. A total of 2422 Operational Taxonomic Units (OTUs) were identified as belonging to 15 phyla, <i>Chlorophyta, Streptophyta, Imbricatea, Chytridiomycota, Ascomycota, Olpidiomycota</i>, being dominant. The wild-type date palms showed a low number of OTUs compared to cultivated date palms, potentially due to the strong influence of soil salinity and low moisture level. However, the wild-type date palm hosted the highest number of unique OTUs. PCA revealed that the eukaryotic microbiome of the wild date palms was separated from the cultivated date palms and that the eukaryotic microbial diversity varied between date palm cultivars in similar environments. Using the highest amounts of biofertilizer and chemical fertilizer decreased the species diversity within the samples. However, a high concentration of biofertilizer combined with a low concentration of chemical fertilizers enhanced the eukaryotic diversity within the samples. We conclude that cultivar type (biotic factor), type of fertilizer, and dosage (abiotic factor) play significant roles in determining the microbiome diversity of the rhizosphere. The wild date palm population could potentially host salt and drought-tolerating eukaryotes that should be further investigated for future development of biofertilizers suitable for drylands.</p><h2>Other Information</h2><p dir="ltr">Published in: Plant Growth Regulation<br>License: <a href="https://creativecommons.org/licenses/by/4.0" target="_blank">https://creativecommons.org/licenses/by/4.0</a><br>See article on publisher's website: <a href="https://dx.doi.org/10.1007/s10725-024-01121-5" target="_blank">https://dx.doi.org/10.1007/s10725-024-01121-5</a></p> |
| eu_rights_str_mv | openAccess |
| id | Manara2_e191655c3d534b82d18801f13560ecb3 |
| identifier_str_mv | 10.1007/s10725-024-01121-5 |
| network_acronym_str | Manara2 |
| network_name_str | Manara2 |
| oai_identifier_str | oai:figshare.com:article/29445965 |
| publishDate | 2024 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphereSara H. Al-Hadidi (17821196)Dana A. Abumaali (17821193)Talaat Ahmed (11482993)Amer Fayad Al-khis (17821199)Sowaid Ali Al-Malki (17821202)Mahmoud Yaish (3855586)Hafeez Ur Rahim (21347972)Muhammad Fasih Khalid (10652246)Hassan Hassan (3240549)Juha M. Alatalo (2931234)Agricultural, veterinary and food sciencesAgriculture, land and farm managementEnvironmental sciencesSoil sciencesFertilizer treatmentFungiHigh-throughput sequencingMicrobiomePhoenix dactyliferaProtistsRhizosphere<p dir="ltr">The date palm (<i>Phoenix dactylifera</i>) is an important cultivated crop in arid areas. Here, we studied the effect of plant genotype and type of fertilizers on the eukaryotic community structures of the date palm rhizosphere. Samples were collected from one wild population, five cultivars from two farms, and a factorial fertilizer experiment (organic, chemical, and biofertilizer) in Qatar. The eukaryotic communities were sequenced using a next-generation sequencing method. A total of 2422 Operational Taxonomic Units (OTUs) were identified as belonging to 15 phyla, <i>Chlorophyta, Streptophyta, Imbricatea, Chytridiomycota, Ascomycota, Olpidiomycota</i>, being dominant. The wild-type date palms showed a low number of OTUs compared to cultivated date palms, potentially due to the strong influence of soil salinity and low moisture level. However, the wild-type date palm hosted the highest number of unique OTUs. PCA revealed that the eukaryotic microbiome of the wild date palms was separated from the cultivated date palms and that the eukaryotic microbial diversity varied between date palm cultivars in similar environments. Using the highest amounts of biofertilizer and chemical fertilizer decreased the species diversity within the samples. However, a high concentration of biofertilizer combined with a low concentration of chemical fertilizers enhanced the eukaryotic diversity within the samples. We conclude that cultivar type (biotic factor), type of fertilizer, and dosage (abiotic factor) play significant roles in determining the microbiome diversity of the rhizosphere. The wild date palm population could potentially host salt and drought-tolerating eukaryotes that should be further investigated for future development of biofertilizers suitable for drylands.</p><h2>Other Information</h2><p dir="ltr">Published in: Plant Growth Regulation<br>License: <a href="https://creativecommons.org/licenses/by/4.0" target="_blank">https://creativecommons.org/licenses/by/4.0</a><br>See article on publisher's website: <a href="https://dx.doi.org/10.1007/s10725-024-01121-5" target="_blank">https://dx.doi.org/10.1007/s10725-024-01121-5</a></p>2024-01-30T09:00:00ZTextJournal contributioninfo:eu-repo/semantics/publishedVersiontextcontribution to journal10.1007/s10725-024-01121-5https://figshare.com/articles/journal_contribution/The_effect_of_type_and_combination_of_fertilizers_on_eukaryotic_microbiome_of_date_palm_rhizosphere/29445965CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/294459652024-01-30T09:00:00Z |
| spellingShingle | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere Sara H. Al-Hadidi (17821196) Agricultural, veterinary and food sciences Agriculture, land and farm management Environmental sciences Soil sciences Fertilizer treatment Fungi High-throughput sequencing Microbiome Phoenix dactylifera Protists Rhizosphere |
| status_str | publishedVersion |
| title | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere |
| title_full | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere |
| title_fullStr | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere |
| title_full_unstemmed | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere |
| title_short | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere |
| title_sort | The effect of type and combination of fertilizers on eukaryotic microbiome of date palm rhizosphere |
| topic | Agricultural, veterinary and food sciences Agriculture, land and farm management Environmental sciences Soil sciences Fertilizer treatment Fungi High-throughput sequencing Microbiome Phoenix dactylifera Protists Rhizosphere |