Comparative analysis of spike sorting using Uniform Manifold Approximation and Projection (UMAP) vs. feature-based methods in in vivo extracellular recordings.

Comparative analysis of spike sorting using Uniform Manifold Approximation and Projection (UMAP) vs. feature-based methods in in vivo extracellular recordings.

<p>Recordings from Buzsáki’s lab [<a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.3003527#pbio.3003527.ref026" target="_blank">26</a>] include an intracellular electrode serving as ground truth (GT, green) and four extracellular electro...

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मुख्य लेखक:	Daniel Suárez-Barrera (22676654) (author)
अन्य लेखक:	Lucas Bayones (22676657) (author), Norberto Encinas-Rodríguez (22676660) (author), Sergio Parra (22676663) (author), Viktor Monroy (22676666) (author), Sebastián Pujalte (22676669) (author), Bernardo Andrade-Ortega (22676672) (author), Héctor Díaz (22676675) (author), Manuel Alvarez (3468647) (author), Antonio Zainos (22676678) (author), Alessio Franci (143351) (author), Román Rossi-Pool (22676681) (author)
प्रकाशित:	2025
विषय:	Cell Biology Molecular Biology Neuroscience Physiology Biotechnology Developmental Biology Science Policy Space Science Biological Sciences not elsewhere classified Mathematical Sciences not elsewhere classified Information Systems not elsewhere classified spike sorting pipelines spike sorting pipeline seldom spiking neurons recorded putative neurons correctly sorted neurons clustering algorithms responsible spike sorting makes reliable spike sorting umap drastically increases data analysis techniques drastically improve processed data experimental data universal practice precise explorations neural recordings neural code mathematically grounded fundamentally motivated extracellular electrophysiology enables deeper crucial step computational cost ad hoc
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समान संसाधन

Comparison of Uniform Manifold Approximation and Projection (UMAP)-based and feature-based spike sorting on synthetic data.
द्वारा: Daniel Suárez-Barrera (22676654)
प्रकाशित: (2025)

Comparison of feature-based and Uniform Manifold Approximation and Projection (UMAP)-based spike sorting for neuron classification.
द्वारा: Daniel Suárez-Barrera (22676654)
प्रकाशित: (2025)

Uniform Manifold Approximation and Projection (UMAP)-based sorting enhances detection of low-firing rate neurons and boosts mutual information.
द्वारा: Daniel Suárez-Barrera (22676654)
प्रकाशित: (2025)

Spatiotemporal spike sorting on multi-electrode array (MEA) data: Uniform Manifold Approximation and Projection (UMAP) vs. SpyKING CIRCUS (SC).
द्वारा: Daniel Suárez-Barrera (22676654)
प्रकाशित: (2025)

Impact of multiunit merging on neural information encoding.
द्वारा: Daniel Suárez-Barrera (22676654)
प्रकाशित: (2025)

Differences in personality traits between sorted and desired houses for people who were sorted against their preference – Helmert contrasts.
द्वारा: Lidia Baran (9322815)
प्रकाशित: (2025)

Differences between houses (desired) – Helmert contrasts.
द्वारा: Lidia Baran (9322815)
प्रकाशित: (2025)

Differences between houses (sorted) – Helmert contrasts.
द्वारा: Lidia Baran (9322815)
प्रकाशित: (2025)

Descriptive statistics for all variables.
द्वारा: Lidia Baran (9322815)
प्रकाशित: (2025)

Psychological traits characteristic for members of each of the Hogwarts Houses.
द्वारा: Lidia Baran (9322815)
प्रकाशित: (2025)

Parameter values for four-pathway synaptic plasticity model.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Ion channels and membrane properties.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Distal LTP induced by simulated rMS is sustained by sodium dendritic spikes but less affected by inhibition than local electrical stimulation.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Voltage traces from local electrical and rMS TBS, recorded at the soma and distal apical tuft, account for the outcomes of synaptic plasticity.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

The synaptic plasticity model reproduces distal LTP for local electric TBS and predicts proximal and distal LTP for rMS TBS.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Pharmacology in silico: rMS-induced LTP depends on dendritic sodium and calcium through voltage-gated calcium channels, as well as synaptic NMDA channels.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Presynaptic and postsynaptic weights change monotonically linearly over stimulus duration.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

The modelling framework for synaptic plasticity replicates proximal LTP induced by 10 Hz rMS protocol and predicts increasing LTP with higher stimulation frequency.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Unifying four-pathway model of long-term synaptic plasticity reproduces frequency dependence of synaptic changes in hippocampal CA1 pyramidal cells evoked by local electrical Schaffer collateral stimulation
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Modelling framework for TMS-induced long-term synaptic plasticity.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

HippoUnit test error scores show the validity of the CA1 pyramidal cell model.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Schematic of added myelinated axon.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

TMS pulse propagates beginning in the axon terminal, subsequently activating soma and dendrites.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Plasticity model reproduces an additional synaptic plasticity paradigm using pairings of presynaptic spikes or bursts of spikes with postsnyaptic spikes or bursts of spikes.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Tonic inhibition reduces LTP amplitude but maintains proximal potentiation and frequency dependence.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Plasticity model shows continued linear increases in LTP induction at higher frequencies.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

LTP induced by 10 Hz rMS rapidly increases after crossing firing threshold, but quickly saturates.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Biphasic stimulus shows different frequency dependence to monophasic stimulus.
द्वारा: Nicholas Hananeia (22683665)
प्रकाशित: (2025)

Imaging Electrical Activity of Retinal Ganglion Cells with Fluorescent Voltage and Calcium Indicator Proteins in Retinal Degenerative <i>rd1</i> Blind Mice
द्वारा: Younginha Jung (22676081)
प्रकाशित: (2025)

Imaging Electrical Activity of Retinal Ganglion Cells with Fluorescent Voltage and Calcium Indicator Proteins in Retinal Degenerative <i>rd1</i> Blind Mice
द्वारा: Younginha Jung (22676081)
प्रकाशित: (2025)

Imaging Electrical Activity of Retinal Ganglion Cells with Fluorescent Voltage and Calcium Indicator Proteins in Retinal Degenerative <i>rd1</i> Blind Mice
द्वारा: Younginha Jung (22676081)
प्रकाशित: (2025)

Imaging Electrical Activity of Retinal Ganglion Cells with Fluorescent Voltage and Calcium Indicator Proteins in Retinal Degenerative <i>rd1</i> Blind Mice
द्वारा: Younginha Jung (22676081)
प्रकाशित: (2025)

Figure 6 – Source Data and MATLAB Code (dmPFC firing, neural selectivity, and LDA decoding)
द्वारा: Jinseon Yu (22598699)
प्रकाशित: (2025)

Data collected in 2012 using Q-methodology to identify the importance of water-based ecosystem services derived from the Shoshone National Forest
द्वारा: Christopher A. Armatas (19657816)
प्रकाशित: (2025)

Image 3_A comprehensive longitudinal analysis of the cellular immune response specific to the spike protein in healthcare workers vaccinated against SARS-CoV-2– ORCHESTRA Project.pdf
द्वारा: Stefano Ugel (7402733)
प्रकाशित: (2025)

Image 2_A comprehensive longitudinal analysis of the cellular immune response specific to the spike protein in healthcare workers vaccinated against SARS-CoV-2– ORCHESTRA Project.pdf
द्वारा: Stefano Ugel (7402733)
प्रकाशित: (2025)

Image 4_A comprehensive longitudinal analysis of the cellular immune response specific to the spike protein in healthcare workers vaccinated against SARS-CoV-2– ORCHESTRA Project.pdf
द्वारा: Stefano Ugel (7402733)
प्रकाशित: (2025)

Image 1_A comprehensive longitudinal analysis of the cellular immune response specific to the spike protein in healthcare workers vaccinated against SARS-CoV-2– ORCHESTRA Project.pdf
द्वारा: Stefano Ugel (7402733)
प्रकाशित: (2025)

Table 1_A comprehensive longitudinal analysis of the cellular immune response specific to the spike protein in healthcare workers vaccinated against SARS-CoV-2– ORCHESTRA Project.docx
द्वारा: Stefano Ugel (7402733)
प्रकाशित: (2025)

Supplement Number 1
द्वारा: Ying Liu (18461)
प्रकाशित: (2025)

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