Initial simulation coordinates.

Initial simulation coordinates.

<p><b>A)</b> p7 amino acids and their corresponding position within the protein. <b>B)</b> Two p7 monomers separated (<i>Sep</i> model) and <b>C)</b> extracted from the hexameric structure PDBID 2M6X (initial <i>Bound</i> model config...

Disgrifiad llawn

Wedi'i Gadw mewn:

Manylion Llyfryddiaeth
Prif Awdur:	Oluwatoyin Campbell (14392137) (author)
Awduron Eraill:	Dina Dahhan (22683620) (author), Viviana Monje (2056069) (author)
Cyhoeddwyd:	2025
Pynciau:	Biophysics Biochemistry Cell Biology Genetics Molecular Biology Biotechnology Cancer Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified Physical Sciences not elsewhere classified Information Systems not elsewhere classified process may help complex transmembrane topology comparing dimer interactions aqueous solution versus promote p7 oligomerization protein residue alignment p7 dimers driven alignment underlie health study demonstrates particularly involving often composed molecular mechanisms key residues hydrophobic contacts hydrogen bonding first helix explain assembly dynamic contributors channel assembly
Tagiau:	Ychwanegu Tag Dim Tagiau, Byddwch y cyntaf i dagio'r cofnod hwn!

Eitemau Tebyg

Initial positioning of monomers in replicas 1, 2, 3 and 4 of <i>Surface</i> model.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Suggested mechanism of p7 dimerization at the ER membrane surface, based on results from this study.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Correlation of protein and lipid motions in the <i>Surface</i> model.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Protein-lipid interactions in the <i>Surface</i> model.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Energetics of protein interactions.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Residue contact comparison with reference dimer structure.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Protein conformational dynamics induced by presence of a lipid membrane.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Protein-lipid dynamic cross correlation maps for <i>Surface</i> replicas 2 and 4 during the entire trajectory.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Frequency of hydrogen bonds between individual residues and lipid species during the last half of trajectory (500 ns) in the <i>Surface</i> model.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Snapshot showing cholesterol contacts with the N-terminus of p2 and H2 and H3 of p1 in the <i>Surface</i> model.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Coulomb (electrostatic), Lennard-Jones (hydrophobic), and total interaction energy of interacting monomer helices in each model.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Surface replica 4 structural evaluation.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Tilt angle conformational landscapes of residues involved in 1-to-1 helix contacts during the last 500 ns of trajectory in the <i>Surface</i> model.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Tilt angle conformational landscapes of residues involved in 1-to-1 helix contacts during the last 200 ns of trajectory in the <i>Sep</i> model.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Contact maps of residues during the last half of trajectory (200 ns in <i>Sep</i> and 500 ns in <i>Surface</i> model), based on a cutoff of 14 Å.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Distance of each amino acid from the average position of phosphorus atoms in the contacting membrane leaflet in the <i>Surface</i> systems.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

RMSF per residue in individual p7 monomers for each <i>Sep</i> and <i>Surface</i> model replicas.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Root mean square deviation measurements of monomers.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Deviations of the <i>Bound</i> model protein dimer conformation from the reference crystal structure of the channel (PDBID: 2M6X).
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

List of protein residues and selected atoms to define the tilt angle vectors.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Description of systems studied.
gan: Oluwatoyin Campbell (14392137)
Cyhoeddwyd: (2025)

Structural Evidence of Interanionic Hydrogen Bonding in Phosphoric Acid Solutions
gan: Pyeongeun Kim (9509954)
Cyhoeddwyd: (2025)

Principle Coordinates Analysis (PCoA) projected onto 2 dimensions between pol-wgs mixtures and nFL genome, subset dataset
gan: August Guang (9975678)
Cyhoeddwyd: (2025)

Principle Coordinates Analysis (PCoA) projected onto 2 dimensions between pol-wgs mixtures and nFL genome, full dataset
gan: August Guang (9975678)
Cyhoeddwyd: (2025)

A Series of Experiments on Criticality and Reflector Reactivity Worth in FCA-XXIII-1 and FCA-XXIV-1 Assemblies Simulating a Small Fast Reactor with a Thick Stainless Steel Reflector
gan: Masahiro Fukushima (2249263)
Cyhoeddwyd: (2025)

Transfer task (pre- and post-test) design and information alignment.
gan: Denise Moerel (9080849)
Cyhoeddwyd: (2025)

The contribution of shared rules to neural information alignment, for the first (A) and second (B) experiment half.
gan: Denise Moerel (9080849)
Cyhoeddwyd: (2025)

The time-course of information alignment, split by first and second experiment half.
gan: Denise Moerel (9080849)
Cyhoeddwyd: (2025)

The time-course of information alignment.
gan: Denise Moerel (9080849)
Cyhoeddwyd: (2025)

Information alignment between the two individuals in each pair.
gan: Denise Moerel (9080849)
Cyhoeddwyd: (2025)

Stimuli, experiment procedure, and behavioral results.
gan: Denise Moerel (9080849)
Cyhoeddwyd: (2025)

Characteristics of patients infected with norovirus GII.
gan: Leera Kittigul (22676501)
Cyhoeddwyd: (2025)

Difference in viral loads in stool samples from norovirus GII-infected patients, grouped by genotype.
gan: Leera Kittigul (22676501)
Cyhoeddwyd: (2025)

Distribution of norovirus genotypes and P-types detected in patients with acute gastroenteritis attending two hospitals in Thailand.
gan: Leera Kittigul (22676501)
Cyhoeddwyd: (2025)

Human Values, Purpose & Meaning 2025 (Dataset)
gan: Human Clarity Institute (22464229)
Cyhoeddwyd: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
gan: Neval Yilmaz (1544557)
Cyhoeddwyd: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
gan: Neval Yilmaz (1544557)
Cyhoeddwyd: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
gan: Neval Yilmaz (1544557)
Cyhoeddwyd: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
gan: Neval Yilmaz (1544557)
Cyhoeddwyd: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
gan: Neval Yilmaz (1544557)
Cyhoeddwyd: (2025)

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