Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx
Introduction<p>Alcanivorax, a typical alkane-degrading bacterium, has demonstrated the ability to utilize inorganic electron donor in some reports. However, a comprehensive analysis of its potentiality to utilize inorganic electron donor is still lacking.</p>Methods<p>In this study...
محفوظ في:
| المؤلف الرئيسي: | |
|---|---|
| مؤلفون آخرون: | , , , , , , |
| منشور في: |
2024
|
| الموضوعات: | |
| الوسوم: |
إضافة وسم
لا توجد وسوم, كن أول من يضع وسما على هذه التسجيلة!
|
| _version_ | 1852025169340530688 |
|---|---|
| author | Zhen Chen (129176) |
| author2 | Shizheng Xiang (20220783) Yao Lu (185912) Qiliang Lai (482588) Chunming Dong (12012) Jianyang Li (461703) Guizhen Li (597668) Zongze Shao (303746) |
| author2_role | author author author author author author author |
| author_facet | Zhen Chen (129176) Shizheng Xiang (20220783) Yao Lu (185912) Qiliang Lai (482588) Chunming Dong (12012) Jianyang Li (461703) Guizhen Li (597668) Zongze Shao (303746) |
| author_role | author |
| dc.creator.none.fl_str_mv | Zhen Chen (129176) Shizheng Xiang (20220783) Yao Lu (185912) Qiliang Lai (482588) Chunming Dong (12012) Jianyang Li (461703) Guizhen Li (597668) Zongze Shao (303746) |
| dc.date.none.fl_str_mv | 2024-11-15T04:10:03Z |
| dc.identifier.none.fl_str_mv | 10.3389/fmars.2024.1491690.s010 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/dataset/Table3_Adaptation_mechanisms_of_Alcanivorax_facilitating_its_predominance_in_marine_environments_xlsx/27749139 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Oceanography Marine Biology Marine Geoscience Biological Oceanography Chemical Oceanography Physical Oceanography Marine Engineering Alcanivorax chemolithotrophic carbon oligotrophic sulfur oxidation TsdA Sqr |
| dc.title.none.fl_str_mv | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx |
| dc.type.none.fl_str_mv | Dataset info:eu-repo/semantics/publishedVersion dataset |
| description | Introduction<p>Alcanivorax, a typical alkane-degrading bacterium, has demonstrated the ability to utilize inorganic electron donor in some reports. However, a comprehensive analysis of its potentiality to utilize inorganic electron donor is still lacking.</p>Methods<p>In this study, genomic and phylogenetic analyzes were used to explore the potential oxidative capacity of inorganic compounds in Alcanivorax. And its functions were verified through physiological experiments.</p>Results<p>The sulfur oxidation-related genes sqr and tsdA are prevalent and have various evolutionary origins. Potential genes for CO oxidation were present in 39 strains, whereas genes associated with iron, hydrogen, and ammonia oxidation were either rare or absent. The physiological functions of Sqr and TsdA were confirmed in six representative strains under heterotrophic conditions. Adding thiosulfate enhanced Alcanivorax growth. However, Alcanivorax bacteria perform sulfide detoxification through Sqr rather than by gaining energy via sulfide oxidation Although no strain was confirmed to be chemoautotrophs, we discovered that the two clades, A. xenomutans and A. profundimaris, can grow under conditions with very low organic matter.</p>Discussion<p>The ability to utilize inorganic compounds as a supplementary energy source and adapt to carbon oligotrophic growth may contribute to the prevalence of Alcanivorax in marine ecosystems.</p> |
| eu_rights_str_mv | openAccess |
| id | Manara_0cf73318fd4e7bc06e335eede82f1f65 |
| identifier_str_mv | 10.3389/fmars.2024.1491690.s010 |
| network_acronym_str | Manara |
| network_name_str | ManaraRepo |
| oai_identifier_str | oai:figshare.com:article/27749139 |
| publishDate | 2024 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsxZhen Chen (129176)Shizheng Xiang (20220783)Yao Lu (185912)Qiliang Lai (482588)Chunming Dong (12012)Jianyang Li (461703)Guizhen Li (597668)Zongze Shao (303746)OceanographyMarine BiologyMarine GeoscienceBiological OceanographyChemical OceanographyPhysical OceanographyMarine EngineeringAlcanivoraxchemolithotrophiccarbon oligotrophicsulfur oxidationTsdASqrIntroduction<p>Alcanivorax, a typical alkane-degrading bacterium, has demonstrated the ability to utilize inorganic electron donor in some reports. However, a comprehensive analysis of its potentiality to utilize inorganic electron donor is still lacking.</p>Methods<p>In this study, genomic and phylogenetic analyzes were used to explore the potential oxidative capacity of inorganic compounds in Alcanivorax. And its functions were verified through physiological experiments.</p>Results<p>The sulfur oxidation-related genes sqr and tsdA are prevalent and have various evolutionary origins. Potential genes for CO oxidation were present in 39 strains, whereas genes associated with iron, hydrogen, and ammonia oxidation were either rare or absent. The physiological functions of Sqr and TsdA were confirmed in six representative strains under heterotrophic conditions. Adding thiosulfate enhanced Alcanivorax growth. However, Alcanivorax bacteria perform sulfide detoxification through Sqr rather than by gaining energy via sulfide oxidation Although no strain was confirmed to be chemoautotrophs, we discovered that the two clades, A. xenomutans and A. profundimaris, can grow under conditions with very low organic matter.</p>Discussion<p>The ability to utilize inorganic compounds as a supplementary energy source and adapt to carbon oligotrophic growth may contribute to the prevalence of Alcanivorax in marine ecosystems.</p>2024-11-15T04:10:03ZDatasetinfo:eu-repo/semantics/publishedVersiondataset10.3389/fmars.2024.1491690.s010https://figshare.com/articles/dataset/Table3_Adaptation_mechanisms_of_Alcanivorax_facilitating_its_predominance_in_marine_environments_xlsx/27749139CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/277491392024-11-15T04:10:03Z |
| spellingShingle | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx Zhen Chen (129176) Oceanography Marine Biology Marine Geoscience Biological Oceanography Chemical Oceanography Physical Oceanography Marine Engineering Alcanivorax chemolithotrophic carbon oligotrophic sulfur oxidation TsdA Sqr |
| status_str | publishedVersion |
| title | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx |
| title_full | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx |
| title_fullStr | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx |
| title_full_unstemmed | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx |
| title_short | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx |
| title_sort | Table3_Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments.xlsx |
| topic | Oceanography Marine Biology Marine Geoscience Biological Oceanography Chemical Oceanography Physical Oceanography Marine Engineering Alcanivorax chemolithotrophic carbon oligotrophic sulfur oxidation TsdA Sqr |