Evaluation of the prediction models submitted for the invited CMI-PB challenge.

Evaluation of the prediction models submitted for the invited CMI-PB challenge.

<p>a) Control models and models submitted by contestants b) Models from systems vaccinology literature. Model evaluation was performed using Spearman’s rank correlation coefficient between predicted ranks by a contestant and actual rank for each of (1.1 and 1.2) antibody MFI, (2.1 and 2.2) imm...

Full description

Saved in:
Bibliographic Details
Main Author: Pramod Shinde (20968597) (author)
Other Authors: Lisa Willemsen (12067970) (author), Michael Anderson (3396614) (author), Minori Aoki (20968600) (author), Saonli Basu (28868) (author), Julie G. Burel (14378658) (author), Peng Cheng (153428) (author), Souradipto Ghosh Dastidar (20968603) (author), Aidan Dunleavy (20968606) (author), Tal Einav (2629669) (author), Jamie Forschmiedt (20968609) (author), Slim Fourati (221387) (author), Javier Garcia (709874) (author), William Gibson (3017370) (author), Jason A. Greenbaum (10287146) (author), Leying Guan (4720269) (author), Weikang Guan (20968612) (author), Jeremy P. Gygi (17346673) (author), Brendan Ha (20968615) (author), Joe Hou (20968618) (author), Jason Hsiao (20968621) (author), Yunda Huang (235282) (author), Rick Jansen (198642) (author), Bhargob Kakoty (20968624) (author), Zhiyu Kang (2821910) (author), James J. Kobie (7365761) (author), Mari Kojima (832141) (author), Anna Konstorum (20968627) (author), Jiyeun Lee (20968630) (author), Sloan A. Lewis (11304747) (author), Aixin Li (2332534) (author), Eric F. Lock (4573135) (author), Jarjapu Mahita (807956) (author), Marcus Mendes (20968633) (author), Hailong Meng (19806) (author), Aidan Neher (20968636) (author), Somayeh Nili (20968639) (author), Lars Rønn Olsen (1633549) (author), Shelby Orfield (20968642) (author), James A. Overton (2634355) (author), Nidhi Pai (20968645) (author), Cokie Parker (20968648) (author), Brian Qian (20968651) (author), Mikkel Rasmussen (20968654) (author), Joaquin Reyna (20968657) (author), Eve Richardson (16561164) (author), Sandra Safo (4241968) (author), Josey Sorenson (20968660) (author), Aparna Srinivasan (4479640) (author), Nicola Thrupp (20968663) (author), Rashmi Tippalagama (14378646) (author), Raphael Trevizani (3639214) (author), Steffen Ventz (4594945) (author), Jiuzhou Wang (7818911) (author), Cheng-Chang Wu (20968666) (author), Ferhat Ay (368912) (author), Barry Grant (21679) (author), Steven H. Kleinstein (8219844) (author), Bjoern Peters (19131) (author)
Published: 2025
Subjects:
Immunology
Science Policy
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Mathematical Sciences not elsewhere classified
Information Systems not elsewhere classified
systems vaccinology studies
settings performed poorly
generate experimental data
div >< p
benchmarked 49 algorithms
advanced data preprocessing
open model evaluations
successful models stood
compare models predicting
putting computational models
build computational models
computational models
model evaluation
models adopted
built models
vaccination responses
test —
study designs
representative subsets
pertussis </
invited challenge
generated datasets
factors contributing
challenging due
booster responses
53 scientists
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:<p>a) Control models and models submitted by contestants b) Models from systems vaccinology literature. Model evaluation was performed using Spearman’s rank correlation coefficient between predicted ranks by a contestant and actual rank for each of (1.1 and 1.2) antibody MFI, (2.1 and 2.2) immune cell frequencies, and (3.1 and 3.2) transcriptomics tasks. The number denotes Spearman rank correlation coefficient, while crosses represent any correlations that are not significant using p ≥ 0.05. Red borders around a cell indicate it was the best-performing model for the task.</p>

Similar Items