Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut
<p dir="ltr">This Figshare record contains processed single-nucleus RNA-seq (snRNA-seq) objects and analysis code used in the study of wild-type (WT) and <i>Pink1</i> knockout (<i>Pink1</i> KO) mouse gut.</p><p dir="ltr">Files:<br>&...
Guardado en:
| Autor principal: | |
|---|---|
| Otros Autores: | , , , |
| Publicado: |
2025
|
| Materias: | |
| Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
| _version_ | 1849927637180350464 |
|---|---|
| author | Muhammad Junaid (14524523) |
| author2 | Soo Jung Park (748802) Yiseul Bae (17001093) Eun Jeong Lee (7400936) Su Bin Lim (7112791) |
| author2_role | author author author author |
| author_facet | Muhammad Junaid (14524523) Soo Jung Park (748802) Yiseul Bae (17001093) Eun Jeong Lee (7400936) Su Bin Lim (7112791) |
| author_role | author |
| dc.creator.none.fl_str_mv | Muhammad Junaid (14524523) Soo Jung Park (748802) Yiseul Bae (17001093) Eun Jeong Lee (7400936) Su Bin Lim (7112791) |
| dc.date.none.fl_str_mv | 2025-11-25T01:59:01Z |
| dc.identifier.none.fl_str_mv | 10.6084/m9.figshare.30702425.v1 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/dataset/Processed_snRNA-seq_data_from_wild-type_and_i_Pink1_i_-deficient_mouse_gut/30702425 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Genomics and transcriptomics Sequence analysis Gene mapping Single-nucleus RNA-seq data gut tissue damage PINK1 knockout rat label transfer |
| dc.title.none.fl_str_mv | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut |
| dc.type.none.fl_str_mv | Dataset info:eu-repo/semantics/publishedVersion dataset |
| description | <p dir="ltr">This Figshare record contains processed single-nucleus RNA-seq (snRNA-seq) objects and analysis code used in the study of wild-type (WT) and <i>Pink1</i> knockout (<i>Pink1</i> KO) mouse gut.</p><p dir="ltr">Files:<br><b>WT_Pink1KO.rds</b>: Seurat object containing QC-filtered and processed nuclei from WT and <i>Pink1</i> KO gut samples.<br><b>Validation_WT_Pink1KO.rds</b>: Seurat object after label transfer and validation using an external public reference dataset, including final cell-type annotations.<br><b>Code.R</b>: R script used for preprocessing, quality control, integration of WT and <i>Pink1</i> KO samples, label transfer from the public reference dataset, and generation of the main figures.</p> |
| eu_rights_str_mv | openAccess |
| id | Manara_15d898fb92d8a4015f2017bad923ed57 |
| identifier_str_mv | 10.6084/m9.figshare.30702425.v1 |
| network_acronym_str | Manara |
| network_name_str | ManaraRepo |
| oai_identifier_str | oai:figshare.com:article/30702425 |
| publishDate | 2025 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gutMuhammad Junaid (14524523)Soo Jung Park (748802)Yiseul Bae (17001093)Eun Jeong Lee (7400936)Su Bin Lim (7112791)Genomics and transcriptomicsSequence analysisGene mappingSingle-nucleus RNA-seq datagut tissue damagePINK1 knockout ratlabel transfer<p dir="ltr">This Figshare record contains processed single-nucleus RNA-seq (snRNA-seq) objects and analysis code used in the study of wild-type (WT) and <i>Pink1</i> knockout (<i>Pink1</i> KO) mouse gut.</p><p dir="ltr">Files:<br><b>WT_Pink1KO.rds</b>: Seurat object containing QC-filtered and processed nuclei from WT and <i>Pink1</i> KO gut samples.<br><b>Validation_WT_Pink1KO.rds</b>: Seurat object after label transfer and validation using an external public reference dataset, including final cell-type annotations.<br><b>Code.R</b>: R script used for preprocessing, quality control, integration of WT and <i>Pink1</i> KO samples, label transfer from the public reference dataset, and generation of the main figures.</p>2025-11-25T01:59:01ZDatasetinfo:eu-repo/semantics/publishedVersiondataset10.6084/m9.figshare.30702425.v1https://figshare.com/articles/dataset/Processed_snRNA-seq_data_from_wild-type_and_i_Pink1_i_-deficient_mouse_gut/30702425CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/307024252025-11-25T01:59:01Z |
| spellingShingle | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut Muhammad Junaid (14524523) Genomics and transcriptomics Sequence analysis Gene mapping Single-nucleus RNA-seq data gut tissue damage PINK1 knockout rat label transfer |
| status_str | publishedVersion |
| title | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut |
| title_full | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut |
| title_fullStr | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut |
| title_full_unstemmed | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut |
| title_short | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut |
| title_sort | Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut |
| topic | Genomics and transcriptomics Sequence analysis Gene mapping Single-nucleus RNA-seq data gut tissue damage PINK1 knockout rat label transfer |