Rates of different base frequencies from different mixture datasets.
<p>The figure explores the impact of the 4 different base frequency proportions (pi(A), pi(C), pi(G), pi(T), gray bar on top of each panel) in our choice of substitution model for IQTree (GTR+F+I+G4). Proportion is on the Y-axis, and the different mixture datasets are ordered from <i>pol...
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2025
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| Shrnutí: | <p>The figure explores the impact of the 4 different base frequency proportions (pi(A), pi(C), pi(G), pi(T), gray bar on top of each panel) in our choice of substitution model for IQTree (GTR+F+I+G4). Proportion is on the Y-axis, and the different mixture datasets are ordered from <i>pol</i> to wgs100 on the X axis. Boxes in panels indicate the central 50% (top and bottom of boxes) and the median (thicker black line in boxes) of the proportions, whiskers indicate the range, and dots indicate outliers. There is a monotonic relationship between relative rate values and wgs proportion beginning with wgs10, when wgs sequences are introduced.</p> <p>(TIFF)</p> |
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