Rates of different base frequencies from different mixture datasets.

Rates of different base frequencies from different mixture datasets.

<p>The figure explores the impact of the 4 different base frequency proportions (pi(A), pi(C), pi(G), pi(T), gray bar on top of each panel) in our choice of substitution model for IQTree (GTR+F+I+G4). Proportion is on the Y-axis, and the different mixture datasets are ordered from <i>pol...

Полное описание

Сохранить в:

Библиографические подробности
Главный автор:	August Guang (9975678) (author)
Другие авторы:	Casey W Dunn (21263816) (author), Vlad Novitsky (3366560) (author), Mark Howison (3315450) (author), Rami Kantor (7863) (author)
Опубликовано:	2025
Предметы:	Genetics Molecular Biology Biotechnology Evolutionary Biology Cancer Statistics Infectious Diseases Virology Biological Sciences not elsewhere classified still broadly used mean cluster size compared tree similarity also decreased number shape alignment provides flexible approach called larger clusters identified partial pol sequences 1 near full improve phylogenetic inference long hiv sequences phylogenetic inference near full 1 sequences shape alignments pol regions new approach molecular clusters improve phylogenetic full dataset short sequences long sequences available sequences xlink "> transmission dynamics systematically masked subset dataset study subset straightforward method short hiv shaped alignments results suggest provide insights proportional increments missing characters immediately depending different lengths analysis goals
Метки:	Добавить метку Нет меток, Требуется 1-ая метка записи!

Схожие документы

Rates of different gamma relative rate categories from different mixture datasets.
по: August Guang (9975678)
Опубликовано: (2025)

Impact of different substitution rate category parameters on cluster inference in different mixture datasets.
по: August Guang (9975678)
Опубликовано: (2025)

Proportion of clusters recovered between different mixtures of pol and wgs sequences and all wgs based on overlap coefficient, subset dataset.
по: August Guang (9975678)
Опубликовано: (2025)

Proportion of clusters recovered between different mixtures of pol and wgs sequences and all wgs based on overlap coefficient, full dataset.
по: August Guang (9975678)
Опубликовано: (2025)

Adjusted mutual information (AMI) boxplot between phylogenetic clustering of different mixtures of pol and wgs sequences and all wgs, subset dataset.
по: August Guang (9975678)
Опубликовано: (2025)

Adjusted mutual information (AMI) boxplot between phylogenetic clustering of different mixtures of pol and wgs sequences and all wgs, full dataset.
по: August Guang (9975678)
Опубликовано: (2025)

Scatter and line plots of cluster number and mean cluster size as wgs percentage in mixture increases, subset dataset.
по: August Guang (9975678)
Опубликовано: (2025)

Scatter and line plots of cluster number and mean cluster size as wgs percentage in mixture increases, full dataset.
по: August Guang (9975678)
Опубликовано: (2025)

Principle Coordinates Analysis (PCoA) projected onto 2 dimensions between pol-wgs mixtures and nFL genome, subset dataset
по: August Guang (9975678)
Опубликовано: (2025)

Principle Coordinates Analysis (PCoA) projected onto 2 dimensions between pol-wgs mixtures and nFL genome, full dataset
по: August Guang (9975678)
Опубликовано: (2025)

Phylogenetic distance between partial pol-wgs mixtures and nFL genome for subset dataset.
по: August Guang (9975678)
Опубликовано: (2025)

Phylogenetic distance between partial pol-wgs mixtures and nFL genome for full dataset.
по: August Guang (9975678)
Опубликовано: (2025)

Workflow for alignment dataset generation and phylogenetic analysis.
по: August Guang (9975678)
Опубликовано: (2025)

Maximum clade credibility (MCC) trees of phylodynamic models for transmission in farm A.
по: Marina Meester (11765542)
Опубликовано: (2025)

Output of phylodynamic (BD) and SEIR model to estimate the effective reproduction number of between-pen transmission (between-pen R<sub>e</sub>) for farm B, compartment 2 during weeks 7 to 16 of batch B.
по: Marina Meester (11765542)
Опубликовано: (2025)

Infection dynamics and phylogenetics of HEV in two farms.
по: Marina Meester (11765542)
Опубликовано: (2025)

Schematic overview of a pig farm and the three hypothesized environmental transmission routes (indicated by pink arrows) of hepatitis E virus in farms.
по: Marina Meester (11765542)
Опубликовано: (2025)

Supplement Number 1
по: Fatemeh Arbabifar (22209775)
Опубликовано: (2025)

Data Sheet 1_Population pharmacokinetics/pharmacodynamics and safety of YPEG-rhGH in elderly subjects.docx
по: Yajie He (20323682)
Опубликовано: (2025)

Gene regulatory networks for different states of GAC post-rewiring.
по: Fatemeh Keikha (20917848)
Опубликовано: (2025)

Supplementary Table S7 from Gene Fusion Detection and Characterization in Long-Read Cancer Transcriptome Sequencing Data with FusionSeeker
по: Yu Chen (14962271)
Опубликовано: (2025)

Supplementary Material for Spanner et al., 2025
по: Rebecca Spanner (22485803)
Опубликовано: (2025)

MMB DTP workshop - Introduction to taxonomic profiling of metagenomes
по: Alise Ponsero (19277953)
Опубликовано: (2025)

Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut
по: Muhammad Junaid (14524523)
Опубликовано: (2025)

Data file 4. Genome assembly statistics
по: Jeanne Arline Rajaonarivelo (17282572)
Опубликовано: (2025)

Data file 3. Raw sequencing data statistics
по: Jeanne Arline Rajaonarivelo (17282572)
Опубликовано: (2025)

Data file 1. Figure 1. Overview of <i>L. loa</i> specimen and genomic representation
по: Jeanne Arline Rajaonarivelo (17282572)
Опубликовано: (2025)

Sequencing alignment analysis
по: li lei (22680179)
Опубликовано: (2025)

Original data
по: Cunyuan Li (22681823)
Опубликовано: (2025)

基于机器学习和网络药理学分析类风湿关节炎中大麻二酚治疗双靶点机制
по: xiaohua fang (22678832)
Опубликовано: (2025)

Zebrafish arrow files for UUATAC
по: Camille Myers (17379841)
Опубликовано: (2025)

Culicoides of DRC : COI sequences and associated metadata
по: Linton Linton (22675775)
Опубликовано: (2025)

Limitations of short-read NGS in detecting <i>RP1 Alu</i> insertions: a case emphasizing Sanger confirmation
по: Takaaki Hayashi (636503)
Опубликовано: (2025)

Adelic Fractal Cosmogenesis Recursive Number-Theoretic Scaffolding of Spacetime Geometry and Cosmic Observables
по: Julian Del Bel (21360938)
Опубликовано: (2025)

Supplementary file 1_Single-cell transcriptomics identifies FOSL1-regulated IGFBP3+ melanoma subtype as a neuro-immunoregulatory signaling hub facilitating tumor progression.docx
по: Wenjia Ge (22687361)
Опубликовано: (2025)

Data Sheet 1_Whole genome sequencing as a reliable alternative for Salmonella serotyping: a comparative study with the gold-standard method.pdf
по: Irene Mileto (20877575)
Опубликовано: (2025)

Supplementary Table S2 from Genomic Profiling of Radiation-Induced Sarcomas Reveals the Immunologic Characteristics and Its Response to Immune Checkpoint Blockade
по: Dong-Chun Hong (16374308)
Опубликовано: (2025)

Supplementary Table S1 from Identifying Mechanisms of Resistance by Circulating Tumor DNA in EVOLVE, a Phase II Trial of Cediranib Plus Olaparib for Ovarian Cancer at Time of PARP Inhibitor Progression
по: Stephanie Lheureux (16797697)
Опубликовано: (2025)

Supplementary Table S2 from Identifying Mechanisms of Resistance by Circulating Tumor DNA in EVOLVE, a Phase II Trial of Cediranib Plus Olaparib for Ovarian Cancer at Time of PARP Inhibitor Progression
по: Stephanie Lheureux (16797697)
Опубликовано: (2025)

Supplementary Table S3 from Identifying Mechanisms of Resistance by Circulating Tumor DNA in EVOLVE, a Phase II Trial of Cediranib Plus Olaparib for Ovarian Cancer at Time of PARP Inhibitor Progression
по: Stephanie Lheureux (16797697)
Опубликовано: (2025)

Cannot write session to /tmp/vufind_sessions/sess_he8o5uh39l4dcvcb4trfoumqem