Annotation of the spatial domain using the STAGATE algorithm.
<p>Spatial distribution of each cluster by STAGATE algorithm at (A) single-cell level and (B) grid level. (C) Dotplot showing markers of cell types and expression patterns of genes associated with tumor subtypes. Clusters 1, 3, and 9 correspond to the tumor spatial domain.</p> <p>(...
محفوظ في:
| المؤلف الرئيسي: | |
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| مؤلفون آخرون: | , , , , , , , , , , , |
| منشور في: |
2025
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| الموضوعات: | |
| الوسوم: |
إضافة وسم
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| _version_ | 1852022635303534592 |
|---|---|
| author | Shunsuke A. Sakai (13789939) |
| author2 | Ryosuke Nomura (20746334) Satoi Nagasawa (697597) SungGi Chi (18386476) Ayako Suzuki (380214) Yutaka Suzuki (1379) Mitsuho Imai (8906186) Yoshiaki Nakamura (3981626) Takayuki Yoshino (616028) Shumpei Ishikawa (154679) Katsuya Tsuchihara (392821) Shun-Ichiro Kageyama (2986365) Riu Yamashita (1612) |
| author2_role | author author author author author author author author author author author author |
| author_facet | Shunsuke A. Sakai (13789939) Ryosuke Nomura (20746334) Satoi Nagasawa (697597) SungGi Chi (18386476) Ayako Suzuki (380214) Yutaka Suzuki (1379) Mitsuho Imai (8906186) Yoshiaki Nakamura (3981626) Takayuki Yoshino (616028) Shumpei Ishikawa (154679) Katsuya Tsuchihara (392821) Shun-Ichiro Kageyama (2986365) Riu Yamashita (1612) |
| author_role | author |
| dc.creator.none.fl_str_mv | Shunsuke A. Sakai (13789939) Ryosuke Nomura (20746334) Satoi Nagasawa (697597) SungGi Chi (18386476) Ayako Suzuki (380214) Yutaka Suzuki (1379) Mitsuho Imai (8906186) Yoshiaki Nakamura (3981626) Takayuki Yoshino (616028) Shumpei Ishikawa (154679) Katsuya Tsuchihara (392821) Shun-Ichiro Kageyama (2986365) Riu Yamashita (1612) |
| dc.date.none.fl_str_mv | 2025-02-18T18:45:56Z |
| dc.identifier.none.fl_str_mv | 10.1371/journal.pcbi.1012854.s001 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/figure/Annotation_of_the_spatial_domain_using_the_STAGATE_algorithm_/28439063 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Biotechnology Developmental Biology Cancer Plant Biology Virology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Mathematical Sciences not elsewhere classified Information Systems not elsewhere classified potentially reflect histology detect histological morphology observed tumor vascularization metastatic colorectal cancer xlink "> single skny ): extending identify microenvironment features detects spatial domains tumor microenvironment cancer progression breast cancer spatial extension spatial domains spatial domain trajectory estimation surrounding area stage progression skny facilitates skny algorithm skny ), divided based based toolkit 14 patients |
| dc.title.none.fl_str_mv | Annotation of the spatial domain using the STAGATE algorithm. |
| dc.type.none.fl_str_mv | Image Figure info:eu-repo/semantics/publishedVersion image |
| description | <p>Spatial distribution of each cluster by STAGATE algorithm at (A) single-cell level and (B) grid level. (C) Dotplot showing markers of cell types and expression patterns of genes associated with tumor subtypes. Clusters 1, 3, and 9 correspond to the tumor spatial domain.</p> <p>(TIF)</p> |
| eu_rights_str_mv | openAccess |
| id | Manara_2fde32f64ca3a3002ea3c2b46c4845a9 |
| identifier_str_mv | 10.1371/journal.pcbi.1012854.s001 |
| network_acronym_str | Manara |
| network_name_str | ManaraRepo |
| oai_identifier_str | oai:figshare.com:article/28439063 |
| publishDate | 2025 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Annotation of the spatial domain using the STAGATE algorithm.Shunsuke A. Sakai (13789939)Ryosuke Nomura (20746334)Satoi Nagasawa (697597)SungGi Chi (18386476)Ayako Suzuki (380214)Yutaka Suzuki (1379)Mitsuho Imai (8906186)Yoshiaki Nakamura (3981626)Takayuki Yoshino (616028)Shumpei Ishikawa (154679)Katsuya Tsuchihara (392821)Shun-Ichiro Kageyama (2986365)Riu Yamashita (1612)BiotechnologyDevelopmental BiologyCancerPlant BiologyVirologyEnvironmental Sciences not elsewhere classifiedBiological Sciences not elsewhere classifiedMathematical Sciences not elsewhere classifiedInformation Systems not elsewhere classifiedpotentially reflect histologydetect histological morphologyobserved tumor vascularizationmetastatic colorectal cancerxlink "> singleskny ): extendingidentify microenvironment featuresdetects spatial domainstumor microenvironmentcancer progressionbreast cancerspatial extensionspatial domainsspatial domaintrajectory estimationsurrounding areastage progressionskny facilitatesskny algorithmskny ),divided basedbased toolkit14 patients<p>Spatial distribution of each cluster by STAGATE algorithm at (A) single-cell level and (B) grid level. (C) Dotplot showing markers of cell types and expression patterns of genes associated with tumor subtypes. Clusters 1, 3, and 9 correspond to the tumor spatial domain.</p> <p>(TIF)</p>2025-02-18T18:45:56ZImageFigureinfo:eu-repo/semantics/publishedVersionimage10.1371/journal.pcbi.1012854.s001https://figshare.com/articles/figure/Annotation_of_the_spatial_domain_using_the_STAGATE_algorithm_/28439063CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/284390632025-02-18T18:45:56Z |
| spellingShingle | Annotation of the spatial domain using the STAGATE algorithm. Shunsuke A. Sakai (13789939) Biotechnology Developmental Biology Cancer Plant Biology Virology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Mathematical Sciences not elsewhere classified Information Systems not elsewhere classified potentially reflect histology detect histological morphology observed tumor vascularization metastatic colorectal cancer xlink "> single skny ): extending identify microenvironment features detects spatial domains tumor microenvironment cancer progression breast cancer spatial extension spatial domains spatial domain trajectory estimation surrounding area stage progression skny facilitates skny algorithm skny ), divided based based toolkit 14 patients |
| status_str | publishedVersion |
| title | Annotation of the spatial domain using the STAGATE algorithm. |
| title_full | Annotation of the spatial domain using the STAGATE algorithm. |
| title_fullStr | Annotation of the spatial domain using the STAGATE algorithm. |
| title_full_unstemmed | Annotation of the spatial domain using the STAGATE algorithm. |
| title_short | Annotation of the spatial domain using the STAGATE algorithm. |
| title_sort | Annotation of the spatial domain using the STAGATE algorithm. |
| topic | Biotechnology Developmental Biology Cancer Plant Biology Virology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Mathematical Sciences not elsewhere classified Information Systems not elsewhere classified potentially reflect histology detect histological morphology observed tumor vascularization metastatic colorectal cancer xlink "> single skny ): extending identify microenvironment features detects spatial domains tumor microenvironment cancer progression breast cancer spatial extension spatial domains spatial domain trajectory estimation surrounding area stage progression skny facilitates skny algorithm skny ), divided based based toolkit 14 patients |