GFF annotation of the complete telomere-to-telomere Coix genome

GFF annotation of the complete telomere-to-telomere Coix genome

<p dir="ltr">This dataset contains the genome annotation files for the first complete telomere-to-telomere (T2T) assembly of the <i>Coix lacryma-jobi</i> genome</p>

Gorde:

Xehetasun bibliografikoak
Egile nagusia:	xiushi Li (22685074) (author)
Argitaratua:	2025
Gaiak:	Genomics Coix lachryma-jobi L T2T genome
Etiketak:	Etiketa erantsi Etiketarik gabe, Izan zaitez lehena erregistro honi etiketa jartzen!

Antzeko izenburuak

Data Sheet 1_Whole genome sequencing as a reliable alternative for Salmonella serotyping: a comparative study with the gold-standard method.pdf
nork: Irene Mileto (20877575)
Argitaratua: (2025)

Genome assembly statistics for Udai21.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Genome assembly and predicted gene BUSCO scores.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Classification of Udai21 and the World Rice Core Collection based on organelle genome data.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Transcriptomic insights into the tripartite plant–pathogen–mycoparasite interaction reveal novel mechanisms involving fungal secretomes and plant amino acid metabolism
nork: kazuya maeda (17387962)
Argitaratua: (2025)

Classification of Udai21 and the World Rice Core Collection based on whole genome sequencing data.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Data file 4. Genome assembly statistics
nork: Jeanne Arline Rajaonarivelo (17282572)
Argitaratua: (2025)

<b>Demographic History and </b><b>Natural Selection</b><b> Regimes Shape Divergent Genomic Architectures in Two Endangered Island Oaks</b>
nork: Wenji Luo (4760160)
Argitaratua: (2025)

Data file 1. Figure 1. Overview of <i>L. loa</i> specimen and genomic representation
nork: Jeanne Arline Rajaonarivelo (17282572)
Argitaratua: (2025)

QC thresholds applied to the public downloaded genomes.
nork: Sophia David (4172902)
Argitaratua: (2025)

Distribution of pathogen genomes represented in amr.watch as of 31 March 2025.
nork: Sophia David (4172902)
Argitaratua: (2025)

Analysis datasets used for Pfsa4 genome-wide association analysis (Hamilton et al).
nork: William Hamilton (20771261)
Argitaratua: (2025)

Supplementary Material for Spanner et al., 2025
nork: Rebecca Spanner (22485803)
Argitaratua: (2025)

Supplementary Figure 1 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
nork: Justin Hwang (15925675)
Argitaratua: (2025)

Supplementary Figure 2 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
nork: Justin Hwang (15925675)
Argitaratua: (2025)

Supplementary Figure 3 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
nork: Justin Hwang (15925675)
Argitaratua: (2025)

Supplementary Table 1 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
nork: Justin Hwang (15925675)
Argitaratua: (2025)

Supplementary Table 2 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
nork: Justin Hwang (15925675)
Argitaratua: (2025)

Supplementary Table 3 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
nork: Justin Hwang (15925675)
Argitaratua: (2025)

liverRegression code.
nork: Amy Stephen (22684448)
Argitaratua: (2025)

DMD-PP OBS DP GWAS results
nork: Yanjie Li (22685354)
Argitaratua: (2025)

The interactive amr.watch application here shows an overview from 179,518 <i>E. coli</i> genomes available as of 31 March 2025.
nork: Sophia David (4172902)
Argitaratua: (2025)

Extended Data Figure 7 – Source Data (corticocortical L2/3 synaptic transmission in Wfs1-CreERT2 mice)
nork: Jinseon Yu (22598699)
Argitaratua: (2025)

Category-level summary of genes with potentially distinct functions between Udai21 and Koshihikari.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Statistics for Udai21 pseudomolecule sequences.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Rice chromosome SNP density for five rice varieties.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Principal component analysis of Udai21 and the World Rice Core Collection.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Classification of Udai21 and the World Rice Core Collection based on ddRAD-Seq data.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Genes that functions were potentially distincted between Udai21 and Koshihikari.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Genes with high and moderate impact variants between Udai21 and Koshihikari.
nork: Hiroki Ikeda (510280)
Argitaratua: (2025)

Supplementary Results for GWAS meta-analysis of major depression (PGC MDD2025)
nork: Mark James Adams (748366)
Argitaratua: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025, filtered by the presence of the carbapenem resistance gene, <i>bla</i><sub>NDM-5</sub>.
nork: Sophia David (4172902)
Argitaratua: (2025)

Supplementary Table S1 from G-Quadruplex Structures Are Key Modulators of Somatic Structural Variants in Cancers
nork: Rongxin Zhang (15293341)
Argitaratua: (2025)

Supplementary Table S2 from G-Quadruplex Structures Are Key Modulators of Somatic Structural Variants in Cancers
nork: Rongxin Zhang (15293341)
Argitaratua: (2025)

Proportion of genomes by year from the five critical-level priority pathogens carrying one or more AMR mechanisms for relevant antimicrobial classes, as displayed in the “AMR mechanism proportion over time” panel within amr.watch.
nork: Sophia David (4172902)
Argitaratua: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025 from the USA (A) and China (B) filtered by the most frequent ST from each country (ST258 and ST11, respectively).
nork: Sophia David (4172902)
Argitaratua: (2025)

Data Sheet 2_Genomic analysis reveals genetic diversity and selection signatures of the Yantai Black pig during domestication and breeding.xlsx
nork: Ming Qin (1737352)
Argitaratua: (2025)

Data Sheet 1_Genomic analysis reveals genetic diversity and selection signatures of the Yantai Black pig during domestication and breeding.docx
nork: Ming Qin (1737352)
Argitaratua: (2025)

Supplementary Tables from Molecular Evolution of Classic Hodgkin Lymphoma Revealed Through Whole-Genome Sequencing of Hodgkin and Reed Sternberg Cells
nork: Francesco Maura (15022226)
Argitaratua: (2025)

Locusplot for EBV GWAS
nork: Yoshiaki Yasumizu (16847256)
Argitaratua: (2025)

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