GFF annotation of the complete telomere-to-telomere Coix genome

GFF annotation of the complete telomere-to-telomere Coix genome

<p dir="ltr">This dataset contains the genome annotation files for the first complete telomere-to-telomere (T2T) assembly of the <i>Coix lacryma-jobi</i> genome</p>

Sábháilte in:

Sonraí bibleagrafaíochta
Príomhchruthaitheoir:	xiushi Li (22685074) (author)
Foilsithe / Cruthaithe:	2025
Ábhair:	Genomics Coix lachryma-jobi L T2T genome
Clibeanna:	Cuir clib leis Níl clibeanna ann, Bí ar an gcéad duine le clib a chur leis an taifead seo!

Míreanna comhchosúla

Data Sheet 1_Whole genome sequencing as a reliable alternative for Salmonella serotyping: a comparative study with the gold-standard method.pdf
de réir: Irene Mileto (20877575)
Foilsithe / Cruthaithe: (2025)

Genome assembly statistics for Udai21.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Genome assembly and predicted gene BUSCO scores.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Classification of Udai21 and the World Rice Core Collection based on organelle genome data.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Transcriptomic insights into the tripartite plant–pathogen–mycoparasite interaction reveal novel mechanisms involving fungal secretomes and plant amino acid metabolism
de réir: kazuya maeda (17387962)
Foilsithe / Cruthaithe: (2025)

Classification of Udai21 and the World Rice Core Collection based on whole genome sequencing data.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Data file 4. Genome assembly statistics
de réir: Jeanne Arline Rajaonarivelo (17282572)
Foilsithe / Cruthaithe: (2025)

<b>Demographic History and </b><b>Natural Selection</b><b> Regimes Shape Divergent Genomic Architectures in Two Endangered Island Oaks</b>
de réir: Wenji Luo (4760160)
Foilsithe / Cruthaithe: (2025)

Data file 1. Figure 1. Overview of <i>L. loa</i> specimen and genomic representation
de réir: Jeanne Arline Rajaonarivelo (17282572)
Foilsithe / Cruthaithe: (2025)

QC thresholds applied to the public downloaded genomes.
de réir: Sophia David (4172902)
Foilsithe / Cruthaithe: (2025)

Distribution of pathogen genomes represented in amr.watch as of 31 March 2025.
de réir: Sophia David (4172902)
Foilsithe / Cruthaithe: (2025)

Analysis datasets used for Pfsa4 genome-wide association analysis (Hamilton et al).
de réir: William Hamilton (20771261)
Foilsithe / Cruthaithe: (2025)

Supplementary Material for Spanner et al., 2025
de réir: Rebecca Spanner (22485803)
Foilsithe / Cruthaithe: (2025)

Supplementary Figure 1 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
de réir: Justin Hwang (15925675)
Foilsithe / Cruthaithe: (2025)

Supplementary Figure 2 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
de réir: Justin Hwang (15925675)
Foilsithe / Cruthaithe: (2025)

Supplementary Figure 3 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
de réir: Justin Hwang (15925675)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 1 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
de réir: Justin Hwang (15925675)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 2 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
de réir: Justin Hwang (15925675)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 3 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
de réir: Justin Hwang (15925675)
Foilsithe / Cruthaithe: (2025)

liverRegression code.
de réir: Amy Stephen (22684448)
Foilsithe / Cruthaithe: (2025)

DMD-PP OBS DP GWAS results
de réir: Yanjie Li (22685354)
Foilsithe / Cruthaithe: (2025)

The interactive amr.watch application here shows an overview from 179,518 <i>E. coli</i> genomes available as of 31 March 2025.
de réir: Sophia David (4172902)
Foilsithe / Cruthaithe: (2025)

Extended Data Figure 7 – Source Data (corticocortical L2/3 synaptic transmission in Wfs1-CreERT2 mice)
de réir: Jinseon Yu (22598699)
Foilsithe / Cruthaithe: (2025)

Category-level summary of genes with potentially distinct functions between Udai21 and Koshihikari.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Statistics for Udai21 pseudomolecule sequences.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Rice chromosome SNP density for five rice varieties.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Principal component analysis of Udai21 and the World Rice Core Collection.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Classification of Udai21 and the World Rice Core Collection based on ddRAD-Seq data.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Genes that functions were potentially distincted between Udai21 and Koshihikari.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Genes with high and moderate impact variants between Udai21 and Koshihikari.
de réir: Hiroki Ikeda (510280)
Foilsithe / Cruthaithe: (2025)

Supplementary Results for GWAS meta-analysis of major depression (PGC MDD2025)
de réir: Mark James Adams (748366)
Foilsithe / Cruthaithe: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025, filtered by the presence of the carbapenem resistance gene, <i>bla</i><sub>NDM-5</sub>.
de réir: Sophia David (4172902)
Foilsithe / Cruthaithe: (2025)

Supplementary Table S1 from G-Quadruplex Structures Are Key Modulators of Somatic Structural Variants in Cancers
de réir: Rongxin Zhang (15293341)
Foilsithe / Cruthaithe: (2025)

Supplementary Table S2 from G-Quadruplex Structures Are Key Modulators of Somatic Structural Variants in Cancers
de réir: Rongxin Zhang (15293341)
Foilsithe / Cruthaithe: (2025)

Proportion of genomes by year from the five critical-level priority pathogens carrying one or more AMR mechanisms for relevant antimicrobial classes, as displayed in the “AMR mechanism proportion over time” panel within amr.watch.
de réir: Sophia David (4172902)
Foilsithe / Cruthaithe: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025 from the USA (A) and China (B) filtered by the most frequent ST from each country (ST258 and ST11, respectively).
de réir: Sophia David (4172902)
Foilsithe / Cruthaithe: (2025)

Data Sheet 2_Genomic analysis reveals genetic diversity and selection signatures of the Yantai Black pig during domestication and breeding.xlsx
de réir: Ming Qin (1737352)
Foilsithe / Cruthaithe: (2025)

Data Sheet 1_Genomic analysis reveals genetic diversity and selection signatures of the Yantai Black pig during domestication and breeding.docx
de réir: Ming Qin (1737352)
Foilsithe / Cruthaithe: (2025)

Supplementary Tables from Molecular Evolution of Classic Hodgkin Lymphoma Revealed Through Whole-Genome Sequencing of Hodgkin and Reed Sternberg Cells
de réir: Francesco Maura (15022226)
Foilsithe / Cruthaithe: (2025)

Locusplot for EBV GWAS
de réir: Yoshiaki Yasumizu (16847256)
Foilsithe / Cruthaithe: (2025)

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