AntiSMASH and RAST Results for Bradyrhizobium sp. Ash2021
<p dir="ltr">Secondary metabolite clusters were predicted for Bradyrhizobium sp. Ash2021 using antiSMASH v7.1.0 [1] and RAST [2].</p><p dir="ltr">The AntiSMASH output can be found in the file: CP100604.1_AntiSMASH_Secondary_Metabolites.zip </p><p dir=&q...
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2024
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| Summary: | <p dir="ltr">Secondary metabolite clusters were predicted for Bradyrhizobium sp. Ash2021 using antiSMASH v7.1.0 [1] and RAST [2].</p><p dir="ltr">The AntiSMASH output can be found in the file: CP100604.1_AntiSMASH_Secondary_Metabolites.zip </p><p dir="ltr">13 secondary metabolites were predicted:</p><table><tr><td><p dir="ltr">Region</p></td><td><p dir="ltr">Type</p></td><td><p dir="ltr">From</p></td><td><p dir="ltr">To</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c1" target="_blank">Region 1</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#t3pks" target="_blank">T3PKS</a></td><td><p>150,880</p></td><td><p>191,932</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c2" target="_blank">Region 2</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#ripp-like" target="_blank">RiPP-like</a></td><td><p>1,308,409</p></td><td><p>1,319,263</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c3" target="_blank">Region 3</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#ripp-like" target="_blank">RiPP-like</a></td><td><p>2,147,279</p></td><td><p>2,158,103</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c4" target="_blank">Region 4</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#hserlactone" target="_blank">hserlactone</a></td><td><p>2,234,697</p></td><td><p>2,255,353</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c5" target="_blank">Region 5</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#t1pks" target="_blank">T1PKS</a></td><td><p>2,368,099</p></td><td><p>2,413,222</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c6" target="_blank">Region 6</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#terpene" target="_blank">terpene</a></td><td><p>3,465,330</p></td><td><p>3,490,320</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c7" target="_blank">Region 7</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#lap" target="_blank">LAP</a></td><td><p>4,536,777</p></td><td><p>4,560,506</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c8" target="_blank">Region 8</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#terpene" target="_blank">terpene</a></td><td><p>5,099,164</p></td><td><p>5,120,024</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c9" target="_blank">Region 9</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#ripp-like" target="_blank">RiPP-like</a></td><td><p>6,091,447</p></td><td><p>6,102,370</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c10" target="_blank">Region 10</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#nrps-like" target="_blank">NRPS-like</a></td><td><p>7,068,118</p></td><td><p>7,111,279</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c11" target="_blank">Region 11</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#ripp-like" target="_blank">RiPP-like</a></td><td><p>7,217,887</p></td><td><p>7,228,789</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c12" target="_blank">Region 12</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#redox-cofactor" target="_blank">redox-cofactor</a></td><td><p>7,409,560</p></td><td><p>7,431,853</p></td></tr><tr><td><a href="https://antismash.secondarymetabolites.org/upload/bacteria-2cee0462-6322-49cd-a5e3-5c9be63dabf1/index.html#r1c13" target="_blank">Region 13</a></td><td><a href="https://docs.antismash.secondarymetabolites.org/glossary/#ripp-like" target="_blank">RiPP-like</a></td><td><p>8,940,708</p></td><td><p>8,951,634</p></td></tr></table><p><br></p><p><br></p><p dir="ltr">The RAST output of the predicted genes can be found in the spreadsheet: RAST_Annotations_Ash2021_Bradyrhizobium.xlsx</p><p dir="ltr">Which includes 3 predicted secondary metabolites, Alkaloid biosynthesis from L-lysine, Auxin biosynthesis, and Thiazole- oxazole-modified microcin (TOMM) synthesis</p><table><tr><td></td></tr></table><p dir="ltr"><br></p><p dir="ltr">[1] Blin K, Shaw S, Augustijn HE, Reitz ZL, Biermann F, Alanjary M, Fetter A, Terlouw BR, Metcalf WW, Helfrich E, van Wezel GP, Medema MH, Weber T. 2023. antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures, and visualisation. Nucl Acids Res 51 (W1) W46-W50. <a href="https://doi.org/10.1093/nar/gkad344" target="_blank">https://doi.org/10.1093/nar/gkad344</a></p><p dir="ltr">[2]<b> </b>Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA, Stevens R, Vonstein V, Wattam AR, Xia F. 2015. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Scientific reports 5: 8365<br><a href="https://doi.org/10.1038/srep08365" target="_blank">https://doi.org/10.1038/srep08365</a></p> |
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