The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates.
<p>Isolation sources, regions, and landscapes are marked as explained in the figure legend. The results of the BLASTN search for six polymorphic regions within protein-coding genes of the reference strain <i><i>Y. pseudotuberculosis</i></i> IP 32953 are represented by ‘...
محفوظ في:
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| مؤلفون آخرون: | , , , , , , , , , , , , , |
| منشور في: |
2025
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| _version_ | 1852016650641997824 |
|---|---|
| author | Aigul A. Abdirassilova (22238739) |
| author2 | Duman T. Yessimseit (22238742) Altynai K. Kassenova (22238745) Beck Z. Abdeliyev (22238748) Zauresh B. Zhumadilova (22238751) Gulnara Zh. Tokmurziyeva (22238754) Galina G. Kovaleva (22238757) Ziyat Zh. Abdel (22238760) Tatiyana V. Meka-Mechenko (22238763) Saule K. Umarova (22238766) Elmira Zh. Begimbayeva (22238769) Sanzhar D. Agzam (22238772) Vladimir L. Motin (22238775) Oleg N. Reva (7870631) Altyn K. Rysbekova (22238778) |
| author2_role | author author author author author author author author author author author author author author |
| author_facet | Aigul A. Abdirassilova (22238739) Duman T. Yessimseit (22238742) Altynai K. Kassenova (22238745) Beck Z. Abdeliyev (22238748) Zauresh B. Zhumadilova (22238751) Gulnara Zh. Tokmurziyeva (22238754) Galina G. Kovaleva (22238757) Ziyat Zh. Abdel (22238760) Tatiyana V. Meka-Mechenko (22238763) Saule K. Umarova (22238766) Elmira Zh. Begimbayeva (22238769) Sanzhar D. Agzam (22238772) Vladimir L. Motin (22238775) Oleg N. Reva (7870631) Altyn K. Rysbekova (22238778) |
| author_role | author |
| dc.creator.none.fl_str_mv | Aigul A. Abdirassilova (22238739) Duman T. Yessimseit (22238742) Altynai K. Kassenova (22238745) Beck Z. Abdeliyev (22238748) Zauresh B. Zhumadilova (22238751) Gulnara Zh. Tokmurziyeva (22238754) Galina G. Kovaleva (22238757) Ziyat Zh. Abdel (22238760) Tatiyana V. Meka-Mechenko (22238763) Saule K. Umarova (22238766) Elmira Zh. Begimbayeva (22238769) Sanzhar D. Agzam (22238772) Vladimir L. Motin (22238775) Oleg N. Reva (7870631) Altyn K. Rysbekova (22238778) |
| dc.date.none.fl_str_mv | 2025-09-12T17:57:54Z |
| dc.identifier.none.fl_str_mv | 10.1371/journal.pntd.0013533.g003 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/figure/The_dendrogram_of_clusters_of_i_Yersinia_i_isolates_based_on_the_0_1_matrix_of_successful_unsuccessful_BLASTN_searches_for_sequences_of_polymorphic_regions_across_the_whole_genome_sequences_of_the_isolates_/30116637 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Microbiology Genetics Molecular Biology Evolutionary Biology Ecology Infectious Diseases Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified shaping specific genotypes ongoing genomic surveillance novel cryptic plasmid natural plague foci genetically distinct isolate cas insertion patterns 99 diagnostic polymorphisms investigated using whole whole genome sequencing similar environmental conditions div >< p associated genetic elements identifying genetic polymorphisms yersinia pestis </ genetic polymorphisms genome sequencing environmental conditions yersinia </ pestis </ sequenced using previously associated genetic diversity ssua </ rhas </ pseudotuberculosis </ napa </ arac </ upland regions suitable tools phylogenetic inference miseq platform med1 population med lineage likely driven findings emphasize embi region different hosts computational pipelines caucasus high biovar classification accurate assembly |
| dc.title.none.fl_str_mv | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates. |
| dc.type.none.fl_str_mv | Image Figure info:eu-repo/semantics/publishedVersion image |
| description | <p>Isolation sources, regions, and landscapes are marked as explained in the figure legend. The results of the BLASTN search for six polymorphic regions within protein-coding genes of the reference strain <i><i>Y. pseudotuberculosis</i></i> IP 32953 are represented by ‘X’ symbols, indicating a negative search result, meaning that the region is either missing or modified in the subject genome.</p> |
| eu_rights_str_mv | openAccess |
| id | Manara_3f7781663d3378678d8aa86b310b544c |
| identifier_str_mv | 10.1371/journal.pntd.0013533.g003 |
| network_acronym_str | Manara |
| network_name_str | ManaraRepo |
| oai_identifier_str | oai:figshare.com:article/30116637 |
| publishDate | 2025 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates.Aigul A. Abdirassilova (22238739)Duman T. Yessimseit (22238742)Altynai K. Kassenova (22238745)Beck Z. Abdeliyev (22238748)Zauresh B. Zhumadilova (22238751)Gulnara Zh. Tokmurziyeva (22238754)Galina G. Kovaleva (22238757)Ziyat Zh. Abdel (22238760)Tatiyana V. Meka-Mechenko (22238763)Saule K. Umarova (22238766)Elmira Zh. Begimbayeva (22238769)Sanzhar D. Agzam (22238772)Vladimir L. Motin (22238775)Oleg N. Reva (7870631)Altyn K. Rysbekova (22238778)MicrobiologyGeneticsMolecular BiologyEvolutionary BiologyEcologyInfectious DiseasesEnvironmental Sciences not elsewhere classifiedBiological Sciences not elsewhere classifiedshaping specific genotypesongoing genomic surveillancenovel cryptic plasmidnatural plague focigenetically distinct isolatecas insertion patterns99 diagnostic polymorphismsinvestigated using wholewhole genome sequencingsimilar environmental conditionsdiv >< passociated genetic elementsidentifying genetic polymorphismsyersinia pestis </genetic polymorphismsgenome sequencingenvironmental conditionsyersinia </pestis </sequenced usingpreviously associatedgenetic diversityssua </rhas </pseudotuberculosis </napa </arac </upland regionssuitable toolsphylogenetic inferencemiseq platformmed1 populationmed lineagelikely drivenfindings emphasizeembi regiondifferent hostscomputational pipelinescaucasus highbiovar classificationaccurate assembly<p>Isolation sources, regions, and landscapes are marked as explained in the figure legend. The results of the BLASTN search for six polymorphic regions within protein-coding genes of the reference strain <i><i>Y. pseudotuberculosis</i></i> IP 32953 are represented by ‘X’ symbols, indicating a negative search result, meaning that the region is either missing or modified in the subject genome.</p>2025-09-12T17:57:54ZImageFigureinfo:eu-repo/semantics/publishedVersionimage10.1371/journal.pntd.0013533.g003https://figshare.com/articles/figure/The_dendrogram_of_clusters_of_i_Yersinia_i_isolates_based_on_the_0_1_matrix_of_successful_unsuccessful_BLASTN_searches_for_sequences_of_polymorphic_regions_across_the_whole_genome_sequences_of_the_isolates_/30116637CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/301166372025-09-12T17:57:54Z |
| spellingShingle | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates. Aigul A. Abdirassilova (22238739) Microbiology Genetics Molecular Biology Evolutionary Biology Ecology Infectious Diseases Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified shaping specific genotypes ongoing genomic surveillance novel cryptic plasmid natural plague foci genetically distinct isolate cas insertion patterns 99 diagnostic polymorphisms investigated using whole whole genome sequencing similar environmental conditions div >< p associated genetic elements identifying genetic polymorphisms yersinia pestis </ genetic polymorphisms genome sequencing environmental conditions yersinia </ pestis </ sequenced using previously associated genetic diversity ssua </ rhas </ pseudotuberculosis </ napa </ arac </ upland regions suitable tools phylogenetic inference miseq platform med1 population med lineage likely driven findings emphasize embi region different hosts computational pipelines caucasus high biovar classification accurate assembly |
| status_str | publishedVersion |
| title | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates. |
| title_full | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates. |
| title_fullStr | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates. |
| title_full_unstemmed | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates. |
| title_short | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates. |
| title_sort | The dendrogram of clusters of <i>Yersinia</i> isolates based on the 0/1 matrix of successful/unsuccessful BLASTN searches for sequences of polymorphic regions across the whole genome sequences of the isolates. |
| topic | Microbiology Genetics Molecular Biology Evolutionary Biology Ecology Infectious Diseases Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified shaping specific genotypes ongoing genomic surveillance novel cryptic plasmid natural plague foci genetically distinct isolate cas insertion patterns 99 diagnostic polymorphisms investigated using whole whole genome sequencing similar environmental conditions div >< p associated genetic elements identifying genetic polymorphisms yersinia pestis </ genetic polymorphisms genome sequencing environmental conditions yersinia </ pestis </ sequenced using previously associated genetic diversity ssua </ rhas </ pseudotuberculosis </ napa </ arac </ upland regions suitable tools phylogenetic inference miseq platform med1 population med lineage likely driven findings emphasize embi region different hosts computational pipelines caucasus high biovar classification accurate assembly |