Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories.
<p>The table shows the total number of genes and of AS genes in <i>C</i>. <i>fulvum</i> isolates Race 5 and Race 4 that are classified in the different gene functional categories. Enrichment p-values were obtained with hypergeometric tests.</p>
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2024
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| _version_ | 1852024274444877824 |
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| author | Alex Z. Zaccaron (17862813) |
| author2 | Li-Hung Chen (849573) Ioannis Stergiopoulos (116916) |
| author2_role | author author |
| author_facet | Alex Z. Zaccaron (17862813) Li-Hung Chen (849573) Ioannis Stergiopoulos (116916) |
| author_role | author |
| dc.creator.none.fl_str_mv | Alex Z. Zaccaron (17862813) Li-Hung Chen (849573) Ioannis Stergiopoulos (116916) |
| dc.date.none.fl_str_mv | 2024-12-18T18:46:12Z |
| dc.identifier.none.fl_str_mv | 10.1371/journal.ppat.1012791.t002 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/dataset/Genes_that_are_alternatively_spliced_AS_in_i_Cladosporium_fulvum_i_isolates_Race_5_and_Race_4_during_tomato_infections_are_enriched_for_different_functional_categories_/28057036 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Microbiology Genetics Molecular Biology Ecology Immunology Infectious Diseases Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified relatively still understudied plant pathogenic fungi div >< p differential isoform usage fungal chromosomes showed enrichment analysis showed host infection cycle disparate infection timepoints transcript isoforms assembled pathogens refine infections >, uncovers genome eukaryotic gene expression cladosporium fulvum </ multiple protein isoforms isolates race 5 infection timepoints transcript isoforms gene expression fulvum </ transcriptome analysis tomato host race 4 multiple cases core chromosomes increases transcript c </ wide patterns two isolates thereby altering single sample rich regions putative impact proteome diversity mostly located monooxygenase activity key element intensively researched finetuning adaptation external stimuli events occurring different isolates causal connection another way alternative splicing |
| dc.title.none.fl_str_mv | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories. |
| dc.type.none.fl_str_mv | Dataset info:eu-repo/semantics/publishedVersion dataset |
| description | <p>The table shows the total number of genes and of AS genes in <i>C</i>. <i>fulvum</i> isolates Race 5 and Race 4 that are classified in the different gene functional categories. Enrichment p-values were obtained with hypergeometric tests.</p> |
| eu_rights_str_mv | openAccess |
| id | Manara_3ffc0f9b2e79110382b1e33e296a8637 |
| identifier_str_mv | 10.1371/journal.ppat.1012791.t002 |
| network_acronym_str | Manara |
| network_name_str | ManaraRepo |
| oai_identifier_str | oai:figshare.com:article/28057036 |
| publishDate | 2024 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories.Alex Z. Zaccaron (17862813)Li-Hung Chen (849573)Ioannis Stergiopoulos (116916)MicrobiologyGeneticsMolecular BiologyEcologyImmunologyInfectious DiseasesPlant BiologyEnvironmental Sciences not elsewhere classifiedBiological Sciences not elsewhere classifiedrelatively still understudiedplant pathogenic fungidiv >< pdifferential isoform usagefungal chromosomes showedenrichment analysis showedhost infection cycledisparate infection timepointstranscript isoforms assembledpathogens refine infections>, uncovers genomeeukaryotic gene expressioncladosporium fulvum </multiple protein isoformsisolates race 5infection timepointstranscript isoformsgene expressionfulvum </transcriptome analysistomato hostrace 4multiple casescore chromosomesincreases transcriptc </wide patternstwo isolatesthereby alteringsingle samplerich regionsputative impactproteome diversitymostly locatedmonooxygenase activitykey elementintensively researchedfinetuning adaptationexternal stimulievents occurringdifferent isolatescausal connectionanother wayalternative splicing<p>The table shows the total number of genes and of AS genes in <i>C</i>. <i>fulvum</i> isolates Race 5 and Race 4 that are classified in the different gene functional categories. Enrichment p-values were obtained with hypergeometric tests.</p>2024-12-18T18:46:12ZDatasetinfo:eu-repo/semantics/publishedVersiondataset10.1371/journal.ppat.1012791.t002https://figshare.com/articles/dataset/Genes_that_are_alternatively_spliced_AS_in_i_Cladosporium_fulvum_i_isolates_Race_5_and_Race_4_during_tomato_infections_are_enriched_for_different_functional_categories_/28057036CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/280570362024-12-18T18:46:12Z |
| spellingShingle | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories. Alex Z. Zaccaron (17862813) Microbiology Genetics Molecular Biology Ecology Immunology Infectious Diseases Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified relatively still understudied plant pathogenic fungi div >< p differential isoform usage fungal chromosomes showed enrichment analysis showed host infection cycle disparate infection timepoints transcript isoforms assembled pathogens refine infections >, uncovers genome eukaryotic gene expression cladosporium fulvum </ multiple protein isoforms isolates race 5 infection timepoints transcript isoforms gene expression fulvum </ transcriptome analysis tomato host race 4 multiple cases core chromosomes increases transcript c </ wide patterns two isolates thereby altering single sample rich regions putative impact proteome diversity mostly located monooxygenase activity key element intensively researched finetuning adaptation external stimuli events occurring different isolates causal connection another way alternative splicing |
| status_str | publishedVersion |
| title | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories. |
| title_full | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories. |
| title_fullStr | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories. |
| title_full_unstemmed | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories. |
| title_short | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories. |
| title_sort | Genes that are alternatively spliced (AS) in <i>Cladosporium fulvum</i> isolates Race 5 and Race 4 during tomato infections are enriched for different functional categories. |
| topic | Microbiology Genetics Molecular Biology Ecology Immunology Infectious Diseases Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified relatively still understudied plant pathogenic fungi div >< p differential isoform usage fungal chromosomes showed enrichment analysis showed host infection cycle disparate infection timepoints transcript isoforms assembled pathogens refine infections >, uncovers genome eukaryotic gene expression cladosporium fulvum </ multiple protein isoforms isolates race 5 infection timepoints transcript isoforms gene expression fulvum </ transcriptome analysis tomato host race 4 multiple cases core chromosomes increases transcript c </ wide patterns two isolates thereby altering single sample rich regions putative impact proteome diversity mostly located monooxygenase activity key element intensively researched finetuning adaptation external stimuli events occurring different isolates causal connection another way alternative splicing |