Dataset for: A robust phylogenetic framework for ophiostomatoid fungi: orders Ophiostomatales and Microascales (Sordariomycetes, Ascomycota)

Dataset for: A robust phylogenetic framework for ophiostomatoid fungi: orders Ophiostomatales and Microascales (Sordariomycetes, Ascomycota)

<p dir="ltr">Supplementary Files for Mycokeys submission: Dataset for: A robust phylogenetic framework for ophiostomatoid fungi: orders Ophiostomatales and Microascales (Sordariomycetes, Ascomycota)</p><p><br></p><p dir="ltr">Files are:</p&g...

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Bibliographic Details
Main Author: Theo Llewellyn (21679874) (author)
Published: 2025
Subjects:
Computational ecology and phylogenetics
Plant and fungus systematics and taxonomy
Mycology
Insect symbiont
plant pathogen
fungal ecology
marker locus
metabarcoding
biodiversity
taxonomy
phylogeny
fungal symbiosis
molecular markers
systematics
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Summary:<p dir="ltr">Supplementary Files for Mycokeys submission: Dataset for: A robust phylogenetic framework for ophiostomatoid fungi: orders Ophiostomatales and Microascales (Sordariomycetes, Ascomycota)</p><p><br></p><p dir="ltr">Files are:</p><p dir="ltr">Microascales:</p><ol><li>Microascales_7genes_TBAS_noASVs_LOCI_nosp.treefile - Locus trees</li><li>Microascales_7genes_TBAS_noASVs_nosp_msa_p1_Btub-out.fas - B-tubulin alignment</li><li>Microascales_7genes_TBAS_noASVs_nosp_msa_p2_EF1a-out.fas - EF1a alignment</li><li>Microascales_7genes_TBAS_noASVs_nosp_msa_p3_ITS-out.fas - ITS alignment</li><li>Microascales_7genes_TBAS_noASVs_nosp_msa_p4_LSU-out.fas - LSU alignment</li><li>Microascales_7genes_TBAS_noASVs_nosp_msa_p5_RPB1-out.fas - RPB1 alignment</li><li>Microascales_7genes_TBAS_noASVs_nosp_msa_p6_RPB2-out.fas - RPB2 alignment</li><li>Microascales_7genes_TBAS_noASVs_nosp_msa_p7_SSU-out.fas - SSU alignment</li><li>Microascales_7genes_TBAS_noASVs_nosp_msa.fasta - concatenated 7-locus alignment</li><li>Microascales_7genes_TBAS_noASVs_nosp_partition.txt - partition file</li><li>Microascales_7genes_TBAS_noASVs_nosp_rooted.treefile - rooted maximum likelihood species tree</li><li>Microascales_7genes_TBAS_noASVs_nosp.treefile - unrooted maximum likelihood species tree</li></ol><p dir="ltr">Ophiostomatales:</p><ol><li>Ophiostomatales_7genes_concat_msa_filtered_MagnaporthalesOG_nosp_p1_Btub-out.fas - B-tubulin alignment</li><li>Ophiostomatales_7genes_concat_msa_filtered_MagnaporthalesOG_nosp_p2_EF1a-out.fas - EF1a alignment</li><li>Ophiostomatales_7genes_concat_msa_filtered_MagnaporthalesOG_nosp_p3_ITS-out.fas - ITS alignment</li><li>Ophiostomatales_7genes_concat_msa_filtered_MagnaporthalesOG_nosp_p4_LSU-out.fas - LSU alignment</li><li>Ophiostomatales_7genes_concat_msa_filtered_MagnaporthalesOG_nosp_p5_RPB1-out.fas - RPB1 alignment</li><li>Ophiostomatales_7genes_concat_msa_filtered_MagnaporthalesOG_nosp_p6_RPB2-out.fas - RPB2 alignment</li><li>Ophiostomatales_7genes_concat_msa_filtered_MagnaporthalesOG_nosp_p7_SSU-out.fas - SSU alignment</li><li>Ophiostomatales_7genes_concat_msa_filtered_MagnaporthalesOG_nosp.fasta - concatenated 7-locus alignment</li><li>Ophiostomatales_7genes_concat_partition_filtered_MagnaporthalesOG_nosp.txt - partition file</li><li>Ophiostomatales_7genes_MagnaporthalesOG_nosp_LOCI.treefile - locus trees</li><li>Ophiostomatales_7genes_MagnaporthalesOG_nosp_rooted.treefile - rooted maximum likelihood species tree</li><li>Ophiostomatales_7genes_MagnaporthalesOG_nosp.treefile - unrooted maximum likelihood species tree</li></ol><p></p>

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