DeepEvo

DeepEvo

<p dir="ltr">The identification of adaptively driven genes underlying human evolutionary traits remains a key challenge in evolutionary genomics. Here we present DeepEvo, an interpretable Siamese neural network that predicts cross-species expression differences from orthologous seque...

पूर्ण विवरण

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ग्रंथसूची विवरण
मुख्य लेखक:	Juntian Qi (22578974) (author)
प्रकाशित:	2025
विषय:	Bioinformatic methods development Genomics and transcriptomics Sequence analysis Human evolution Adaptively driven genes Cis-regulatory elements Siamese neural networks
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समान संसाधन

liverRegression code.
द्वारा: Amy Stephen (22684448)
प्रकाशित: (2025)

基于机器学习和网络药理学分析类风湿关节炎中大麻二酚治疗双靶点机制
द्वारा: xiaohua fang (22678832)
प्रकाशित: (2025)

<b>Supplementary files</b> - G protein-coupled receptor diversity and evolution in the closest living relatives of Metazoa
द्वारा: Alain Garcia De Las Bayonas (21095624)
प्रकाशित: (2025)

Data Sheet 1_Genome-wide identification and expression profiling of bHLH transcription factors associated with ferulic acid biosynthesis in Angelica sinensis.zip
द्वारा: Khadija Tehseen Arshad (22687526)
प्रकाशित: (2025)

Table 1_Genome-wide identification and expression profiling of bHLH transcription factors associated with ferulic acid biosynthesis in Angelica sinensis.xlsx
द्वारा: Khadija Tehseen Arshad (22687526)
प्रकाशित: (2025)

Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut
द्वारा: Muhammad Junaid (14524523)
प्रकाशित: (2025)

Supplementary Data from Extrachromosomal Amplification of Human Papillomavirus Episomes Is a Mechanism of Cervical Carcinogenesis
द्वारा: Nicole M. Rossi (15619062)
प्रकाशित: (2025)

Supplementary Figures from Extrachromosomal Amplification of Human Papillomavirus Episomes Is a Mechanism of Cervical Carcinogenesis
द्वारा: Nicole M. Rossi (15619062)
प्रकाशित: (2025)

Quantitative performance comparison of our method and five multilayer network ranking baselines on the GAC dataset across multiple evaluation metrics.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Classification performance across the three simulation settings.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Comparison of Gene Discovery and Performance Evaluation with Baseline Methods.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Case study on Esophageal Squamous Cell Carcinoma (ESCC).
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Ablation studies and performance evaluation under varying training conditions.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

classification results on simulated datasets and biomarkers and classification results for GAC dataset.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Simulation networks and gene expression analysis across disease states.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Overview of the TransMarker framework for identifying DNBs from single cell time course data.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Robustness analysis of the entropic regularization parameter in the Gromov–Wasserstein alignment step of TransMarker.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Robustness of TransMarker concerning the selection and completeness of the prior knowledge network.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

UpSet diagram illustrating the overlap of DNBs selected by our method and top-ranked genes by the 13 baseline centrality-based ranking algorithms.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Functional enrichment analysis of the 28 DNB genes identified for ESCC.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Functional enrichment analysis of the DNBs identified for GAC.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Mean expression levels of biomarker genes across various disease states.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

Gene regulatory networks for different states of GAC post-rewiring.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

UMAP visualizations of extracted CD8<sup> + </sup> T and CD4<sup> + </sup> T cell barcodes, employed for downstream subsequent single-cell trajectory and classification analyses.
द्वारा: Fatemeh Keikha (20917848)
प्रकाशित: (2025)

GHRAT: Global Heat Risk Assessment Toolbox
द्वारा: Xuewen Lei (18138637)
प्रकाशित: (2025)

Full list of metrics, indicators, and health-related outcomes used in PAICE rapid literature
द्वारा: Rachel Juel (11796266)
प्रकाशित: (2025)

Data Sheet 1_Adaptive laboratory evolution enhances cell yield and lipid production of Chlorella sorokiniana under mildly cold conditions.pdf
द्वारा: Shu-Yi Lu (22679327)
प्रकाशित: (2025)

Structural variants of <i>Fragaria vesca</i>
द्वारा: Minto Odagiri (22680003)
प्रकाशित: (2025)

Gene expression data of <i>Fragaria vesca</i>
द्वारा: Minto Odagiri (22680003)
प्रकाशित: (2025)

Supplementary file 1_SLC11A1 protein as a key regulator of iron metabolism, ferroptosis mediator, and putative therapeutic target in nonalcoholic fatty liver disease: an integrated bioinformatics analysis.zip
द्वारा: Yang Wang (5921)
प्रकाशित: (2025)

Data Sheet 1_MRI-based radiomic clustering identifies a glioblastoma subtype enriched for neural stemness and proliferative programs.csv
द्वारा: Zhongyi Zhang (219440)
प्रकाशित: (2025)

Data Sheet 2_MRI-based radiomic clustering identifies a glioblastoma subtype enriched for neural stemness and proliferative programs.pdf
द्वारा: Zhongyi Zhang (219440)
प्रकाशित: (2025)

<b>Minimal repeats identified by machine learning as novel cross-species markers of translation initiation sites</b>
द्वारा: Ali Mohammad Ali Maddi (11301486)
प्रकाशित: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
द्वारा: Xu Hua (14954032)
प्रकाशित: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
द्वारा: Xu Hua (14954032)
प्रकाशित: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
द्वारा: Xu Hua (14954032)
प्रकाशित: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
द्वारा: Xu Hua (14954032)
प्रकाशित: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
द्वारा: Xu Hua (14954032)
प्रकाशित: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
द्वारा: Xu Hua (14954032)
प्रकाशित: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
द्वारा: Xu Hua (14954032)
प्रकाशित: (2025)

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