DeepEvo

DeepEvo

<p dir="ltr">The identification of adaptively driven genes underlying human evolutionary traits remains a key challenge in evolutionary genomics. Here we present DeepEvo, an interpretable Siamese neural network that predicts cross-species expression differences from orthologous seque...

Бүрэн тодорхойлолт

-д хадгалсан:

Номзүйн дэлгэрэнгүй
Үндсэн зохиолч:	Juntian Qi (22578974) (author)
Хэвлэсэн:	2025
Нөхцлүүд:	Bioinformatic methods development Genomics and transcriptomics Sequence analysis Human evolution Adaptively driven genes Cis-regulatory elements Siamese neural networks
Шошгууд:	Шошго нэмэх Шошго байхгүй, Энэхүү баримтыг шошголох эхний хүн болох!

Ижил төстэй зүйлс

liverRegression code.
-н: Amy Stephen (22684448)
Хэвлэсэн: (2025)

基于机器学习和网络药理学分析类风湿关节炎中大麻二酚治疗双靶点机制
-н: xiaohua fang (22678832)
Хэвлэсэн: (2025)

<b>Supplementary files</b> - G protein-coupled receptor diversity and evolution in the closest living relatives of Metazoa
-н: Alain Garcia De Las Bayonas (21095624)
Хэвлэсэн: (2025)

Data Sheet 1_Genome-wide identification and expression profiling of bHLH transcription factors associated with ferulic acid biosynthesis in Angelica sinensis.zip
-н: Khadija Tehseen Arshad (22687526)
Хэвлэсэн: (2025)

Table 1_Genome-wide identification and expression profiling of bHLH transcription factors associated with ferulic acid biosynthesis in Angelica sinensis.xlsx
-н: Khadija Tehseen Arshad (22687526)
Хэвлэсэн: (2025)

Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut
-н: Muhammad Junaid (14524523)
Хэвлэсэн: (2025)

Supplementary Data from Extrachromosomal Amplification of Human Papillomavirus Episomes Is a Mechanism of Cervical Carcinogenesis
-н: Nicole M. Rossi (15619062)
Хэвлэсэн: (2025)

Supplementary Figures from Extrachromosomal Amplification of Human Papillomavirus Episomes Is a Mechanism of Cervical Carcinogenesis
-н: Nicole M. Rossi (15619062)
Хэвлэсэн: (2025)

Quantitative performance comparison of our method and five multilayer network ranking baselines on the GAC dataset across multiple evaluation metrics.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Classification performance across the three simulation settings.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Comparison of Gene Discovery and Performance Evaluation with Baseline Methods.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Case study on Esophageal Squamous Cell Carcinoma (ESCC).
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Ablation studies and performance evaluation under varying training conditions.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

classification results on simulated datasets and biomarkers and classification results for GAC dataset.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Simulation networks and gene expression analysis across disease states.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Overview of the TransMarker framework for identifying DNBs from single cell time course data.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Robustness analysis of the entropic regularization parameter in the Gromov–Wasserstein alignment step of TransMarker.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Robustness of TransMarker concerning the selection and completeness of the prior knowledge network.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

UpSet diagram illustrating the overlap of DNBs selected by our method and top-ranked genes by the 13 baseline centrality-based ranking algorithms.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Functional enrichment analysis of the 28 DNB genes identified for ESCC.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Functional enrichment analysis of the DNBs identified for GAC.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Mean expression levels of biomarker genes across various disease states.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

Gene regulatory networks for different states of GAC post-rewiring.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

UMAP visualizations of extracted CD8<sup> + </sup> T and CD4<sup> + </sup> T cell barcodes, employed for downstream subsequent single-cell trajectory and classification analyses.
-н: Fatemeh Keikha (20917848)
Хэвлэсэн: (2025)

GHRAT: Global Heat Risk Assessment Toolbox
-н: Xuewen Lei (18138637)
Хэвлэсэн: (2025)

Full list of metrics, indicators, and health-related outcomes used in PAICE rapid literature
-н: Rachel Juel (11796266)
Хэвлэсэн: (2025)

Data Sheet 1_Adaptive laboratory evolution enhances cell yield and lipid production of Chlorella sorokiniana under mildly cold conditions.pdf
-н: Shu-Yi Lu (22679327)
Хэвлэсэн: (2025)

Structural variants of <i>Fragaria vesca</i>
-н: Minto Odagiri (22680003)
Хэвлэсэн: (2025)

Gene expression data of <i>Fragaria vesca</i>
-н: Minto Odagiri (22680003)
Хэвлэсэн: (2025)

Supplementary file 1_SLC11A1 protein as a key regulator of iron metabolism, ferroptosis mediator, and putative therapeutic target in nonalcoholic fatty liver disease: an integrated bioinformatics analysis.zip
-н: Yang Wang (5921)
Хэвлэсэн: (2025)

Data Sheet 1_MRI-based radiomic clustering identifies a glioblastoma subtype enriched for neural stemness and proliferative programs.csv
-н: Zhongyi Zhang (219440)
Хэвлэсэн: (2025)

Data Sheet 2_MRI-based radiomic clustering identifies a glioblastoma subtype enriched for neural stemness and proliferative programs.pdf
-н: Zhongyi Zhang (219440)
Хэвлэсэн: (2025)

<b>Minimal repeats identified by machine learning as novel cross-species markers of translation initiation sites</b>
-н: Ali Mohammad Ali Maddi (11301486)
Хэвлэсэн: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
-н: Xu Hua (14954032)
Хэвлэсэн: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
-н: Xu Hua (14954032)
Хэвлэсэн: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
-н: Xu Hua (14954032)
Хэвлэсэн: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
-н: Xu Hua (14954032)
Хэвлэсэн: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
-н: Xu Hua (14954032)
Хэвлэсэн: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
-н: Xu Hua (14954032)
Хэвлэсэн: (2025)

Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
-н: Xu Hua (14954032)
Хэвлэсэн: (2025)

Cannot write session to /tmp/vufind_sessions/sess_rofl509hrr10qfph114a1pe01h