Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.

<p>Rasmussen’11 denotes Rasmussen et. al (2011), which was referenced in the introduction. However, the model is not distributed for use as a software or program, so we were unable to assess its computational efficiency (*). (BD–birth death).</p>

محفوظ في:
التفاصيل البيبلوغرافية
المؤلف الرئيسي: Ciara Judge (20161514) (author)
مؤلفون آخرون: Timothy Vaughan (5654278) (author), Timothy Russell (20161517) (author), Sam Abbott (9548946) (author), Louis du Plessis (3264087) (author), Tanja Stadler (118822) (author), Oliver Brady (5331668) (author), Sarah Hill (101064) (author)
منشور في: 2024
الموضوعات:
الوسوم: إضافة وسم
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_version_ 1852025270987390976
author Ciara Judge (20161514)
author2 Timothy Vaughan (5654278)
Timothy Russell (20161517)
Sam Abbott (9548946)
Louis du Plessis (3264087)
Tanja Stadler (118822)
Oliver Brady (5331668)
Sarah Hill (101064)
author2_role author
author
author
author
author
author
author
author_facet Ciara Judge (20161514)
Timothy Vaughan (5654278)
Timothy Russell (20161517)
Sam Abbott (9548946)
Louis du Plessis (3264087)
Tanja Stadler (118822)
Oliver Brady (5331668)
Sarah Hill (101064)
author_role author
dc.creator.none.fl_str_mv Ciara Judge (20161514)
Timothy Vaughan (5654278)
Timothy Russell (20161517)
Sam Abbott (9548946)
Louis du Plessis (3264087)
Tanja Stadler (118822)
Oliver Brady (5331668)
Sarah Hill (101064)
dc.date.none.fl_str_mv 2024-11-11T18:48:15Z
dc.identifier.none.fl_str_mv 10.1371/journal.pcbi.1012528.t004
dc.relation.none.fl_str_mv https://figshare.com/articles/dataset/Comparison_of_the_key_characteristics_of_EpiFusion_compared_to_the_tools_and_literature_referred_to_in_this_manuscript_/27659015
dc.rights.none.fl_str_mv CC BY 4.0
info:eu-repo/semantics/openAccess
dc.subject.none.fl_str_mv Genetics
Biotechnology
Evolutionary Biology
Cancer
Infectious Diseases
Computational Biology
Mathematical Sciences not elsewhere classified
surveillance rapidly changes
scaled trees estimated
remain largely distinct
poorly sampled epidemics
effective reproduction number
accommodate future extensions
respiratory virus outbreaks
approach scales efficiently
2014 ebola outbreak
phylodynamic observation models
div >< p
</ sub >)
</ sub
simulated outbreaks
outbreak dynamics
joint approach
xlink ">
weighted according
sierra leone
retrospective analysis
phylogenetic uncertainty
pathogen phylodynamics
joint inference
integrating phylodynamic
infectious disease
increases certainty
genetic sequences
fundamental challenge
existing methods
demonstrate advances
dataset size
complementary strengths
circulating pathogen
case incidence
accurately estimating
dc.title.none.fl_str_mv Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.
dc.type.none.fl_str_mv Dataset
info:eu-repo/semantics/publishedVersion
dataset
description <p>Rasmussen’11 denotes Rasmussen et. al (2011), which was referenced in the introduction. However, the model is not distributed for use as a software or program, so we were unable to assess its computational efficiency (*). (BD–birth death).</p>
eu_rights_str_mv openAccess
id Manara_64a7210cc4763a8303bbcfb514b3ffe3
identifier_str_mv 10.1371/journal.pcbi.1012528.t004
network_acronym_str Manara
network_name_str ManaraRepo
oai_identifier_str oai:figshare.com:article/27659015
publishDate 2024
repository.mail.fl_str_mv
repository.name.fl_str_mv
repository_id_str
rights_invalid_str_mv CC BY 4.0
spelling Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.Ciara Judge (20161514)Timothy Vaughan (5654278)Timothy Russell (20161517)Sam Abbott (9548946)Louis du Plessis (3264087)Tanja Stadler (118822)Oliver Brady (5331668)Sarah Hill (101064)GeneticsBiotechnologyEvolutionary BiologyCancerInfectious DiseasesComputational BiologyMathematical Sciences not elsewhere classifiedsurveillance rapidly changesscaled trees estimatedremain largely distinctpoorly sampled epidemicseffective reproduction numberaccommodate future extensionsrespiratory virus outbreaksapproach scales efficiently2014 ebola outbreakphylodynamic observation modelsdiv >< p</ sub >)</ subsimulated outbreaksoutbreak dynamicsjoint approachxlink ">weighted accordingsierra leoneretrospective analysisphylogenetic uncertaintypathogen phylodynamicsjoint inferenceintegrating phylodynamicinfectious diseaseincreases certaintygenetic sequencesfundamental challengeexisting methodsdemonstrate advancesdataset sizecomplementary strengthscirculating pathogencase incidenceaccurately estimating<p>Rasmussen’11 denotes Rasmussen et. al (2011), which was referenced in the introduction. However, the model is not distributed for use as a software or program, so we were unable to assess its computational efficiency (*). (BD–birth death).</p>2024-11-11T18:48:15ZDatasetinfo:eu-repo/semantics/publishedVersiondataset10.1371/journal.pcbi.1012528.t004https://figshare.com/articles/dataset/Comparison_of_the_key_characteristics_of_EpiFusion_compared_to_the_tools_and_literature_referred_to_in_this_manuscript_/27659015CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/276590152024-11-11T18:48:15Z
spellingShingle Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.
Ciara Judge (20161514)
Genetics
Biotechnology
Evolutionary Biology
Cancer
Infectious Diseases
Computational Biology
Mathematical Sciences not elsewhere classified
surveillance rapidly changes
scaled trees estimated
remain largely distinct
poorly sampled epidemics
effective reproduction number
accommodate future extensions
respiratory virus outbreaks
approach scales efficiently
2014 ebola outbreak
phylodynamic observation models
div >< p
</ sub >)
</ sub
simulated outbreaks
outbreak dynamics
joint approach
xlink ">
weighted according
sierra leone
retrospective analysis
phylogenetic uncertainty
pathogen phylodynamics
joint inference
integrating phylodynamic
infectious disease
increases certainty
genetic sequences
fundamental challenge
existing methods
demonstrate advances
dataset size
complementary strengths
circulating pathogen
case incidence
accurately estimating
status_str publishedVersion
title Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.
title_full Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.
title_fullStr Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.
title_full_unstemmed Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.
title_short Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.
title_sort Comparison of the key characteristics of EpiFusion compared to the tools and literature referred to in this manuscript.
topic Genetics
Biotechnology
Evolutionary Biology
Cancer
Infectious Diseases
Computational Biology
Mathematical Sciences not elsewhere classified
surveillance rapidly changes
scaled trees estimated
remain largely distinct
poorly sampled epidemics
effective reproduction number
accommodate future extensions
respiratory virus outbreaks
approach scales efficiently
2014 ebola outbreak
phylodynamic observation models
div >< p
</ sub >)
</ sub
simulated outbreaks
outbreak dynamics
joint approach
xlink ">
weighted according
sierra leone
retrospective analysis
phylogenetic uncertainty
pathogen phylodynamics
joint inference
integrating phylodynamic
infectious disease
increases certainty
genetic sequences
fundamental challenge
existing methods
demonstrate advances
dataset size
complementary strengths
circulating pathogen
case incidence
accurately estimating