<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025 from the USA (A) and China (B) filtered by the most frequent ST from each country (ST258 and ST11, respectively).

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025 from the USA (A) and China (B) filtered by the most frequent ST from each country (ST258 and ST11, respectively).

<p>The “Variants overview” panel shows the twenty most frequent variants (STs) in each country, while the “AMR mechanism count over time” panel shows the number of genomes from the selected variant (ST258/ST11) by year and the number with (blue) and without (green) any carbapenem resistance me...

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Bibliografische gegevens
Hoofdauteur:	Sophia David (4172902) (author)
Andere auteurs:	Julio Diaz Caballero (22676621) (author), Natacha Couto (6590267) (author), Khalil Abudahab (10669917) (author), Nabil-Fareed Alikhan (5066198) (author), Corin Yeats (1565) (author), Anthony Underwood (23932) (author), Alison Molloy (22676624) (author), Diana Connor (22676627) (author), Heather M. Shane (22676630) (author), Philip M. Ashton (4109527) (author), Hajo Grundmann (51089) (author), Matthew T.G. Holden (22676633) (author), Edward J. Feil (7295681) (author), Sonia B. Sia (22676636) (author), Pilar Donado-Godoy (3709714) (author), Ravikumar K. Lingegowda (22676639) (author), Iruka N. Okeke (8088743) (author), Silvia Argimón (282286) (author), David M. Aanensen (7538114) (author)
Gepubliceerd in:	2025
Onderwerpen:	Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified whole genome sequencing performed using community highly variable representation 31 march 2025 providing comparable data div >< p 700 pathogen genomes shared wgs data quality wgs data public wgs data platform included data integrating wgs data global genomics data watch platform incorporates watch enables users watch </ p watch </ genomic data wgs continues interactive platform information platform global efforts enables interrogation watch (< pathogen ’ pathogen populations visualises high vaccine development timely insights support research standard methods specific curation sampling information part due ongoing basis national levels growing volumes geotemporal information geotemporal distribution geographic regions genomic surveillance different species broad adoption bespoke species antimicrobial resistance
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Distribution of pathogen genomes represented in amr.watch as of 31 March 2025.
door: Sophia David (4172902)
Gepubliceerd in: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025, filtered by the presence of the carbapenem resistance gene, <i>bla</i><sub>NDM-5</sub>.
door: Sophia David (4172902)
Gepubliceerd in: (2025)

The interactive amr.watch application here shows an overview from 179,518 <i>E. coli</i> genomes available as of 31 March 2025.
door: Sophia David (4172902)
Gepubliceerd in: (2025)

Curated list of AMR mechanisms by pathogen from AMRFinderPlus that are reported in amr.watch.
door: Sophia David (4172902)
Gepubliceerd in: (2025)

Proportion of genomes by year from the five critical-level priority pathogens carrying one or more AMR mechanisms for relevant antimicrobial classes, as displayed in the “AMR mechanism proportion over time” panel within amr.watch.
door: Sophia David (4172902)
Gepubliceerd in: (2025)

Overview of the Illumina paired-end entries available in the International Nucleotide Sequence Database Collaboration (INSDC) databases as of 31 March 2025.
door: Sophia David (4172902)
Gepubliceerd in: (2025)

QC thresholds applied to the public downloaded genomes.
door: Sophia David (4172902)
Gepubliceerd in: (2025)

Data Sheet 1_Whole genome sequencing as a reliable alternative for Salmonella serotyping: a comparative study with the gold-standard method.pdf
door: Irene Mileto (20877575)
Gepubliceerd in: (2025)

Table 5_Evaluation of four DNA extraction kits for implementation of nanopore sequencing in routine surveillance of antimicrobial resistance in low-resource settings.xlsx
door: Natasia R. Thornval (22679261)
Gepubliceerd in: (2025)

Table 3_Evaluation of four DNA extraction kits for implementation of nanopore sequencing in routine surveillance of antimicrobial resistance in low-resource settings.xlsx
door: Natasia R. Thornval (22679261)
Gepubliceerd in: (2025)

Table 4_Evaluation of four DNA extraction kits for implementation of nanopore sequencing in routine surveillance of antimicrobial resistance in low-resource settings.xlsx
door: Natasia R. Thornval (22679261)
Gepubliceerd in: (2025)

Table 1_Evaluation of four DNA extraction kits for implementation of nanopore sequencing in routine surveillance of antimicrobial resistance in low-resource settings.xlsx
door: Natasia R. Thornval (22679261)
Gepubliceerd in: (2025)

Table 2_Evaluation of four DNA extraction kits for implementation of nanopore sequencing in routine surveillance of antimicrobial resistance in low-resource settings.pdf
door: Natasia R. Thornval (22679261)
Gepubliceerd in: (2025)

Supplementary Material for Spanner et al., 2025
door: Rebecca Spanner (22485803)
Gepubliceerd in: (2025)

Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut
door: Muhammad Junaid (14524523)
Gepubliceerd in: (2025)

Information on the farms and their livestock, and on the applied observation method.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

Sex of guard dogs and their behaviour towards external dogs.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

Reported direction of the guard dogs’ behaviour when guarding various farm animal species (N = 25 farms).
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

Observed direction of the guard dogs’ (N = 15) behaviour when guarding horses.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

The observed guard dogs’ behaviour towards their own species, farm animals, farm persons and others.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

Guard dogs (N = 19) by breed, in proximity of 1–3 body lengths to goats and horses.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

The effect of the guard dogs’ socialization on their proximity of 1–3 body lengths with goats and horses and their behaviour towards their own species, farm animals, farm persons and others.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

The observed guard dogs’ proximity to goats and horses.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

Observation methods.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

Protocol data.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

Field observation data.
door: Konstanze Krueger (6750239)
Gepubliceerd in: (2025)

Swedish publications on COVID-19 and SARS-CoV-2 between May 2020 and May 2025
door: Liane Hughes (9650850)
Gepubliceerd in: (2025)

Supplementary Data from Extrachromosomal Amplification of Human Papillomavirus Episomes Is a Mechanism of Cervical Carcinogenesis
door: Nicole M. Rossi (15619062)
Gepubliceerd in: (2025)

Supplementary Figures from Extrachromosomal Amplification of Human Papillomavirus Episomes Is a Mechanism of Cervical Carcinogenesis
door: Nicole M. Rossi (15619062)
Gepubliceerd in: (2025)

Improved Multibody Dynamic Simulation of a Carrier-Based Rotorcraft Crash on a Ship Deck
door: Kunhyuk Kong (22687724)
Gepubliceerd in: (2025)

GFF annotation of the complete telomere-to-telomere Coix genome
door: xiushi Li (22685074)
Gepubliceerd in: (2025)

Initial five rows from the metadata CSV file for executed trajectories of 2019-06-28. Distances and entropies are rounded to 10<sup>−3</sup>.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

Structure of the metadata CSV files.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

Initial five rows from the interaction CSV file for executed trajectories of 2019-06-28. Distances are rounded to 10<sup>−3</sup>.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

Structure of the CSV files with information about interactions.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

Information about number of flights deleted during the pre-processing of the trajectory data, for June 28<sup><i>th</i></sup>, 2019.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

Computational cost of the analyses.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

Evolution of daily network metrics as a function of the total distance flown.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

Topological properties of individual networks.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

Time series of complex networks measurements extracted from interactions for planned trajectories over the whole European airspace.
door: Raúl López-Martín (21386066)
Gepubliceerd in: (2025)

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