Make your data count: Process, publish and reuse your metabarcoding output in SBDI
<p>Presentation slides from a seminar by the Swedish Biodiversity Data Infrastructure (SBDI) to discover tools for converting amplicon sequence reads into species occurrence data that contribute to global biodiversity knowledge. We introduce SBDI and the Global Biodiversity Information Facilit...
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2024
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| _version_ | 1852025330387124224 |
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| author | Anders Andersson (11395910) |
| author2 | Maria Prager (17620158) Jeanette Tångrot (12288731) |
| author2_role | author author |
| author_facet | Anders Andersson (11395910) Maria Prager (17620158) Jeanette Tångrot (12288731) |
| author_role | author |
| dc.creator.none.fl_str_mv | Anders Andersson (11395910) Maria Prager (17620158) Jeanette Tångrot (12288731) |
| dc.date.none.fl_str_mv | 2024-11-08T14:33:55Z |
| dc.identifier.none.fl_str_mv | 10.17044/scilifelab.27620376.v1 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/presentation/Make_your_data_count_Process_publish_and_reuse_your_metabarcoding_output_in_SBDI/27620376 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Bioinformatics and computational biology not elsewhere classified Conservation and biodiversity Open access Biodiversity informatics Metabarcoding FAIR |
| dc.title.none.fl_str_mv | Make your data count: Process, publish and reuse your metabarcoding output in SBDI |
| dc.type.none.fl_str_mv | Text Presentation info:eu-repo/semantics/publishedVersion text |
| description | <p>Presentation slides from a seminar by the Swedish Biodiversity Data Infrastructure (SBDI) to discover tools for converting amplicon sequence reads into species occurrence data that contribute to global biodiversity knowledge. We introduce SBDI and the Global Biodiversity Information Facility (GBIF) platforms, and demonstrate SBDI resources for metabarcoding data, including a guide for the European Nucleotide Archive (ENA) submission, a pipeline for denoising reads into Amplicon Sequence Variants (ASVs), a web interface for submitting and accessing ASV data in SBDI, and an R package for processing downloaded data into ASV table format.</p> |
| eu_rights_str_mv | openAccess |
| id | Manara_7cc152bb83ceaef1652853ccdbf2b7fa |
| identifier_str_mv | 10.17044/scilifelab.27620376.v1 |
| network_acronym_str | Manara |
| network_name_str | ManaraRepo |
| oai_identifier_str | oai:figshare.com:article/27620376 |
| publishDate | 2024 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Make your data count: Process, publish and reuse your metabarcoding output in SBDIAnders Andersson (11395910)Maria Prager (17620158)Jeanette Tångrot (12288731)Bioinformatics and computational biology not elsewhere classifiedConservation and biodiversityOpen accessBiodiversity informaticsMetabarcodingFAIR<p>Presentation slides from a seminar by the Swedish Biodiversity Data Infrastructure (SBDI) to discover tools for converting amplicon sequence reads into species occurrence data that contribute to global biodiversity knowledge. We introduce SBDI and the Global Biodiversity Information Facility (GBIF) platforms, and demonstrate SBDI resources for metabarcoding data, including a guide for the European Nucleotide Archive (ENA) submission, a pipeline for denoising reads into Amplicon Sequence Variants (ASVs), a web interface for submitting and accessing ASV data in SBDI, and an R package for processing downloaded data into ASV table format.</p>2024-11-08T14:33:55ZTextPresentationinfo:eu-repo/semantics/publishedVersiontext10.17044/scilifelab.27620376.v1https://figshare.com/articles/presentation/Make_your_data_count_Process_publish_and_reuse_your_metabarcoding_output_in_SBDI/27620376CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/276203762024-11-08T14:33:55Z |
| spellingShingle | Make your data count: Process, publish and reuse your metabarcoding output in SBDI Anders Andersson (11395910) Bioinformatics and computational biology not elsewhere classified Conservation and biodiversity Open access Biodiversity informatics Metabarcoding FAIR |
| status_str | publishedVersion |
| title | Make your data count: Process, publish and reuse your metabarcoding output in SBDI |
| title_full | Make your data count: Process, publish and reuse your metabarcoding output in SBDI |
| title_fullStr | Make your data count: Process, publish and reuse your metabarcoding output in SBDI |
| title_full_unstemmed | Make your data count: Process, publish and reuse your metabarcoding output in SBDI |
| title_short | Make your data count: Process, publish and reuse your metabarcoding output in SBDI |
| title_sort | Make your data count: Process, publish and reuse your metabarcoding output in SBDI |
| topic | Bioinformatics and computational biology not elsewhere classified Conservation and biodiversity Open access Biodiversity informatics Metabarcoding FAIR |