Differences in computing performance between ENQUIRE’s gene normalization algorithm and GNorm2-Bioformer.

<p>We ran the computations on a Linux computer with 20 CPUs (3.1 GHz) and 252 GB of RAM. Up to 8 cores were used for parallelization. Maximum RAM usage was measured as resident set size (RSS). Estimated time in seconds per processed abstract (sec/abstract) also accounts for loading gene alias...

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Main Author: Luca Musella (19986312) (author)
Other Authors: Alejandro Afonso Castro (20707500) (author), Xin Lai (685589) (author), Max Widmann (17298988) (author), Julio Vera (86706) (author)
Published: 2025
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Summary:<p>We ran the computations on a Linux computer with 20 CPUs (3.1 GHz) and 252 GB of RAM. Up to 8 cores were used for parallelization. Maximum RAM usage was measured as resident set size (RSS). Estimated time in seconds per processed abstract (sec/abstract) also accounts for loading gene alias lookup tables and machine learning models.</p>