Mean true positive and true negative clustering rates, 50 simulations for FRECL.

Mean true positive and true negative clustering rates, 50 simulations for FRECL.

<p>Mean true positive and true negative clustering rates, 50 simulations for FRECL.</p>

محفوظ في:

التفاصيل البيبلوغرافية
المؤلف الرئيسي:	Susana Conde (5495675) (author)
مؤلفون آخرون:	Shahin Tavakoli (2569426) (author), Daphne Ezer (3072147) (author)
منشور في:	2024
الموضوعات:	Genetics Molecular Biology Neuroscience Evolutionary Biology Developmental Biology Cancer Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Mathematical Sciences not elsewhere classified gene expression patterns gene expression data functional regression clustering time series experiments method provides useful function regression model div >< p different experimental conditions similar biological functions experimental conditions related functions type algorithm polysomal ribosomes one another often collected novel approach k </ inter alia identify groups extensive simulations >- means
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مواد مشابهة

Distribution of the True Positive Rate, above, and True Negative Rate, below, for the 50 simulations from a model with <i>K</i> = 3 clusters, i.i.d. random error term.
حسب: Susana Conde (5495675)
منشور في: (2024)

Surface plots for the parameter estimates of FRECL.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed distributions of ARI ×100 from the FRECL partition after consensus clustering; against the number of runs.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed adjusted Rand index for iteration in FRECL, 100 runs.
حسب: Susana Conde (5495675)
منشور في: (2024)

Line plots with the TNR for the simulations with one replicate against the number of clusters for FRECL and the five alternative methods for simulated data sets.
حسب: Susana Conde (5495675)
منشور في: (2024)

Line plots with the TPR for the simulations with one replicate against the number of clusters for FRECL and the five alternative methods for simulated data sets.
حسب: Susana Conde (5495675)
منشور في: (2024)

Line plots with the RI for the simulations with one replicate against the number of clusters for FRECL and the five alternative methods for simulated data sets.
حسب: Susana Conde (5495675)
منشور في: (2024)

Line plots with the ARI for the simulations with one replicate against the number of clusters for FRECL and the five alternative methods for simulated data sets.
حسب: Susana Conde (5495675)
منشور في: (2024)

Line plots with the RI, left, TPR, centre, and TNR, right for the simulations with one replicate against the number of clusters for FRECL and the five alternative methods for simulated data sets.
حسب: Susana Conde (5495675)
منشور في: (2024)

Each column represents a cluster designated by FRECL, either when considering the average across the two days (1d) or the two days separately (2d).
حسب: Susana Conde (5495675)
منشور في: (2024)

Distribution of the adjusted Rand index, above, and Rand index, below, for the 50 simulations from a model with <i>K</i> = 3 clusters, i.i.d. random error term.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed sample means and standard deviations of the distributions of the % ARI in the 50 simulations.
حسب: Susana Conde (5495675)
منشور في: (2024)

Mean observed adjusted Rand index; and Rand index, left and right respectively, over 50 simulations.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed sample means and standard deviations of the distributions of the % ARI in the 50 simulations; comparing different numbers of individual FPCs for Alt 1 (<i>Y</i>, <i>X</i>).
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed adjusted Rand index x100 between the methods for the partitions found setting <i>K</i> = 10 clusters in the data set with mean gene expressions in two days.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed adjusted Rand index x100 between the methods for the partitions found setting <i>K</i> = 10 clusters in the data set with mean gene expressions in two days.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed adjusted Rand index x100 between the methods for the partitions found setting <i>K</i> = 10 clusters in the data set with mean gene expressions spread in one day.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed adjusted Rand index x100 between the methods for the partitions found setting <i>K</i> = 10 clusters in the data set with mean gene expressions spread in one day.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed sample means and standard deviations of the distributions of the % ARI in the 50 simulations; comparing analyses where the alternative methods were performed with either <i>Y</i> only or <i>Y</i>, <i>X</i>. In all cases, adding the functional explanatory variables results in smaller ARIs.
حسب: Susana Conde (5495675)
منشور في: (2024)

Observed adjusted Rand index for one-replicate simulations (with AR(1), <i>ρ</i> = 0.5, <i>σ</i><sup>2</sup> = 0.1) against the number of clusters <i>K</i> = 3, 6, 9, 12 (on the horizontal axis).
حسب: Susana Conde (5495675)
منشور في: (2024)

AR(1) error term, <i>ρ</i> = 0.5, <i>σ</i><sup>2</sup> = 0.1 versus i.i.d., <i>σ</i><sup>2</sup> = 1 for all the methods; <i>K</i> = 3.
حسب: Susana Conde (5495675)
منشور في: (2024)

Results of the replicated simulations.
حسب: Susana Conde (5495675)
منشور في: (2024)

Illustration of simulated gene expressions during 48 hours, see horizontal axis, based on [60]’s data set. Left, raw simulated values; right, smoothed values.
حسب: Susana Conde (5495675)
منشور في: (2024)

Fig 7 -
حسب: Susana Conde (5495675)
منشور في: (2024)

Additional file 9 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Additional file 8 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Additional file 7 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Additional file 6 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Additional file 5 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Additional file 4 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Additional file 3 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Additional file 2 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Additional file 1 of Common cell lysis procedures distort ribosome profiling analyses of gene expression
حسب: Aoife O’Connell (22036658)
منشور في: (2025)

Regulation of the Hippo signaling pathway by E1B-55K in p53-negative H1299 cells.
حسب: Laura Seddar (22553073)
منشور في: (2025)

Comparison of true positives and false positives across conditions.
حسب: Simonida Zehr (3293523)
منشور في: (2025)

Evaluation metrics for test dataset separated by true DSvalue.
حسب: Maurice Günder (20721957)
منشور في: (2025)

E1B-55K represses the IFN response in A549 but not H1299 cells.
حسب: Laura Seddar (22553073)
منشور في: (2025)

Adenovirus lacking E1B-55K is more severely impacted by IFN than wildtype.
حسب: Laura Seddar (22553073)
منشور في: (2025)

E1B-55K suppresses the p53 transcriptional network during infection in A549 cells.
حسب: Laura Seddar (22553073)
منشور في: (2025)

Source data and statistical analysis.
حسب: Laura Seddar (22553073)
منشور في: (2025)

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