Adjusted mutual information (AMI) boxplot between phylogenetic clustering of different mixtures of pol and wgs sequences and all wgs, subset dataset.

<p>The figure demonstrates six panels for different bootstrap thresholds (indicated in gray in the top bars). Boxes in panels indicate the central 50% (top and bottom of boxes) and the median (thicker black line in boxes) of the AMI (Y axes) for a given set of pol-wgs mixture datasets (X axes)...

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Bibliographic Details
Main Author:	August Guang (9975678) (author)
Other Authors:	Casey W Dunn (21263816) (author), Vlad Novitsky (3366560) (author), Mark Howison (3315450) (author), Rami Kantor (7863) (author)
Published:	2025
Subjects:	Genetics Molecular Biology Biotechnology Evolutionary Biology Cancer Statistics Infectious Diseases Virology Biological Sciences not elsewhere classified still broadly used mean cluster size compared tree similarity also decreased number shape alignment provides flexible approach called larger clusters identified partial pol sequences 1 near full improve phylogenetic inference long hiv sequences phylogenetic inference near full 1 sequences shape alignments pol regions new approach molecular clusters improve phylogenetic full dataset short sequences long sequences available sequences xlink "> transmission dynamics systematically masked subset dataset study subset straightforward method short hiv shaped alignments results suggest provide insights proportional increments missing characters immediately depending different lengths analysis goals
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Adjusted mutual information (AMI) boxplot between phylogenetic clustering of different mixtures of pol and wgs sequences and all wgs, subset dataset.

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