Validation Benchmark Study F1000-Research (Data)
<p dir="ltr">Analysis results and data used to perform the benchmarking study entitled as R data objects.</p><p dir="ltr"><b>Leveraging Synthetic Data to Validate a Benchmark Study for Differential Abundance Tests for 16S Microbiome Sequencing Data</b&g...
محفوظ في:
| المؤلف الرئيسي: | |
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| مؤلفون آخرون: | |
| منشور في: |
2025
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| الموضوعات: | |
| الوسوم: |
إضافة وسم
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| _version_ | 1852021342268817408 |
|---|---|
| author | Clemens Kreutz (8306544) |
| author2 | Eva Kohnert (17787440) |
| author2_role | author |
| author_facet | Clemens Kreutz (8306544) Eva Kohnert (17787440) |
| author_role | author |
| dc.creator.none.fl_str_mv | Clemens Kreutz (8306544) Eva Kohnert (17787440) |
| dc.date.none.fl_str_mv | 2025-04-14T07:42:30Z |
| dc.identifier.none.fl_str_mv | 10.6084/m9.figshare.28596398.v2 |
| dc.relation.none.fl_str_mv | https://figshare.com/articles/dataset/Validation_Benchmark_Study_F1000-Research_Data_/28596398 |
| dc.rights.none.fl_str_mv | CC BY 4.0 info:eu-repo/semantics/openAccess |
| dc.subject.none.fl_str_mv | Bioinformatic methods development Benchmarking study differential abundance analysis pipeline Microbiome and human genetics Preregistered Study sequencing 16 S rRNA gene |
| dc.title.none.fl_str_mv | Validation Benchmark Study F1000-Research (Data) |
| dc.type.none.fl_str_mv | Dataset info:eu-repo/semantics/publishedVersion dataset |
| description | <p dir="ltr">Analysis results and data used to perform the benchmarking study entitled as R data objects.</p><p dir="ltr"><b>Leveraging Synthetic Data to Validate a Benchmark Study for Differential Abundance Tests for 16S Microbiome Sequencing Data</b></p><p dir="ltr">The study protocol is the following:</p><p dir="ltr">Kohnert, E., & Kreutz, C. (2025). Computational study protocol: leveraging synthetic data to validate a benchmark study for differential abundance tests for 16s microbiome sequencing data. <i>F1000Research</i>, <i>13</i>, 1180. <a href="https://f1000research.com/articles/13-1180" rel="noreferrer" target="_blank">https://f1000research.com/articles/13-1180</a></p><p dir="ltr">The code used to generate this is available at </p><p dir="ltr"><a href="https://github.com/kreutz-lab/ValidationBenchmarkStudyF1000" rel="noreferrer" target="_blank">https://github.com/kreutz-lab/ValidationBenchmarkStudyF1000</a></p><p dir="ltr">Each RDS file contains the so called data_to_compare object, which is a hirarchical list object containing the experimental data, simualted data, results of the DA analyses as well as other calculations and information. Some information is only available in a compressed form. Use bs_decompress() from our github repository for de-compression.</p> |
| eu_rights_str_mv | openAccess |
| id | Manara_bbb0e4a2d080ba3bc2938e54cc87f605 |
| identifier_str_mv | 10.6084/m9.figshare.28596398.v2 |
| network_acronym_str | Manara |
| network_name_str | ManaraRepo |
| oai_identifier_str | oai:figshare.com:article/28596398 |
| publishDate | 2025 |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | CC BY 4.0 |
| spelling | Validation Benchmark Study F1000-Research (Data)Clemens Kreutz (8306544)Eva Kohnert (17787440)Bioinformatic methods developmentBenchmarking studydifferential abundance analysis pipelineMicrobiome and human geneticsPreregistered Studysequencing 16 S rRNA gene<p dir="ltr">Analysis results and data used to perform the benchmarking study entitled as R data objects.</p><p dir="ltr"><b>Leveraging Synthetic Data to Validate a Benchmark Study for Differential Abundance Tests for 16S Microbiome Sequencing Data</b></p><p dir="ltr">The study protocol is the following:</p><p dir="ltr">Kohnert, E., & Kreutz, C. (2025). Computational study protocol: leveraging synthetic data to validate a benchmark study for differential abundance tests for 16s microbiome sequencing data. <i>F1000Research</i>, <i>13</i>, 1180. <a href="https://f1000research.com/articles/13-1180" rel="noreferrer" target="_blank">https://f1000research.com/articles/13-1180</a></p><p dir="ltr">The code used to generate this is available at </p><p dir="ltr"><a href="https://github.com/kreutz-lab/ValidationBenchmarkStudyF1000" rel="noreferrer" target="_blank">https://github.com/kreutz-lab/ValidationBenchmarkStudyF1000</a></p><p dir="ltr">Each RDS file contains the so called data_to_compare object, which is a hirarchical list object containing the experimental data, simualted data, results of the DA analyses as well as other calculations and information. Some information is only available in a compressed form. Use bs_decompress() from our github repository for de-compression.</p>2025-04-14T07:42:30ZDatasetinfo:eu-repo/semantics/publishedVersiondataset10.6084/m9.figshare.28596398.v2https://figshare.com/articles/dataset/Validation_Benchmark_Study_F1000-Research_Data_/28596398CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/285963982025-04-14T07:42:30Z |
| spellingShingle | Validation Benchmark Study F1000-Research (Data) Clemens Kreutz (8306544) Bioinformatic methods development Benchmarking study differential abundance analysis pipeline Microbiome and human genetics Preregistered Study sequencing 16 S rRNA gene |
| status_str | publishedVersion |
| title | Validation Benchmark Study F1000-Research (Data) |
| title_full | Validation Benchmark Study F1000-Research (Data) |
| title_fullStr | Validation Benchmark Study F1000-Research (Data) |
| title_full_unstemmed | Validation Benchmark Study F1000-Research (Data) |
| title_short | Validation Benchmark Study F1000-Research (Data) |
| title_sort | Validation Benchmark Study F1000-Research (Data) |
| topic | Bioinformatic methods development Benchmarking study differential abundance analysis pipeline Microbiome and human genetics Preregistered Study sequencing 16 S rRNA gene |