This Figure shows the flow of information between components when running a simulation.
<p>The user specifies the model, which is checked for syntactic and semantic consistency (like units or variable names). This is done through interaction with the web editor or command line interface. If these checks fail, errors are returned. Otherwise, the simulation loop starts by enumerati...
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2024
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| Summary: | <p>The user specifies the model, which is checked for syntactic and semantic consistency (like units or variable names). This is done through interaction with the web editor or command line interface. If these checks fail, errors are returned. Otherwise, the simulation loop starts by enumerating all possible species and reactions within the system into a flat representation. This can lead to errors if the system is too large. This flat representation is then optimized and put into the flat model (non-compartmental) simulator. Whenever a dynamic structural change is needed, the flattened model is transformed into a hierarchical, compartmental representation to execute those changes, and the loop starts again with the enumeration.</p> |
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