Number of dengue virus whole genome sequences mostly from Ho Chi Minh City, Vietnam, assigned to each lineage over time.

Number of dengue virus whole genome sequences mostly from Ho Chi Minh City, Vietnam, assigned to each lineage over time.

<p>Bar graphs shown for (A) DENV-1, (B) DENV-2, (C) DENV-3, and (D) DENV-4. (E) Time series of whole genome sequences from Rio Grande do Sul, Brazil, by year. (F) Lineage assignments of whole genome sequences from the rest of Brazil in this data set (non-case study sequences from Rio Grande Do...

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Main Author: Verity Hill (11063429) (author)
Other Authors: Sara Cleemput (19681663) (author), James Siqueira Pereira (5989775) (author), Robert J. Gifford (12488303) (author), Vagner Fonseca (6681251) (author), Houriiyah Tegally (9681758) (author), Anderson F. Brito (7610027) (author), Gabriela Ribeiro (4748373) (author), Vinicius Carius de Souza (19681666) (author), Isabela Carvalho Brcko (19681669) (author), Igor Santana Ribeiro (10984008) (author), Iago Trezena Tavares De Lima (19681672) (author), Svetoslav Nanev Slavov (6503843) (author), Sandra Coccuzzo Sampaio (4830639) (author), Maria Carolina Elias (9906069) (author), Vi Thuy Tran (7645685) (author), Duong Thi Hue Kien (8703990) (author), Tuyen Huynh (13119518) (author), Sophie Yacoub (622640) (author), Idrissa Dieng (9666677) (author), Richard Salvato (19681675) (author), Gabriel Luz Wallau (5672192) (author), Tatiana S. Gregianini (19681678) (author), Fernanda M. S. Godinho (16324540) (author), Chantal B. F. Vogels (3357140) (author), Mallery I. Breban (10765921) (author), Mariana Leguia (222401) (author), Suraj Jagtap (15085726) (author), Rahul Roy (25029) (author), Chanditha Hapuarachchi (19681681) (author), Gaspary Mwanyika (17399667) (author), Marta Giovanetti (3137202) (author), Luiz C. J. Alcantara (5412470) (author), Nuno R. Faria (8098247) (author), Christine V. F. Carrington (14241404) (author), Kathryn A. Hanley (9238698) (author), Edward C. Holmes (8067413) (author), Wim Dumon (19681684) (author), Alex Ranieri Jerônimo Lima (5989769) (author), Tulio de Oliveira (68362) (author), Nathan D. Grubaugh (7610039) (author)
Published: 2024
Subjects:
Microbiology
Ecology
Science Policy
Mental Health
Infectious Diseases
Virology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
standardized neutral descriptor
present assignment tools
new geographical areas
currently causing epidemics
aid genomic surveillance
new lineage nomenclature
propose new lineages
div >< p
relevant denv diversity
lineage system
denv diversity
virus classification
unprecedented scope
therefore critical
subnational discussions
sequence data
proposed lineages
potential epidemiological
phylogenetic studies
phylogenetic distance
org </
named major
minor lineages
including methods
high thresholds
genotypic levels
endemic settings
dengue virus
complex patterns
clinical importance
clade size
assign lineages
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