Protein-lipid dynamic cross correlation maps for <i>Surface</i> replicas 2 and 4 during the entire trajectory.

Protein-lipid dynamic cross correlation maps for <i>Surface</i> replicas 2 and 4 during the entire trajectory.

<p>Negative and positive correlations represented in blue and red respectively.</p> <p>(TIFF)</p>

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Bibliografiske detaljer
Hovedforfatter:	Oluwatoyin Campbell (14392137) (author)
Andre forfattere:	Dina Dahhan (22683620) (author), Viviana Monje (2056069) (author)
Udgivet:	2025
Fag:	Biophysics Biochemistry Cell Biology Genetics Molecular Biology Biotechnology Cancer Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified Physical Sciences not elsewhere classified Information Systems not elsewhere classified process may help complex transmembrane topology comparing dimer interactions aqueous solution versus promote p7 oligomerization protein residue alignment p7 dimers driven alignment underlie health study demonstrates particularly involving often composed molecular mechanisms key residues hydrophobic contacts hydrogen bonding first helix explain assembly dynamic contributors channel assembly
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Lignende værker

Initial positioning of monomers in replicas 1, 2, 3 and 4 of <i>Surface</i> model.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Protein-lipid interactions in the <i>Surface</i> model.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

RMSF per residue in individual p7 monomers for each <i>Sep</i> and <i>Surface</i> model replicas.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Correlation of protein and lipid motions in the <i>Surface</i> model.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Surface replica 4 structural evaluation.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Frequency of hydrogen bonds between individual residues and lipid species during the last half of trajectory (500 ns) in the <i>Surface</i> model.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Protein conformational dynamics induced by presence of a lipid membrane.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Contact maps of residues during the last half of trajectory (200 ns in <i>Sep</i> and 500 ns in <i>Surface</i> model), based on a cutoff of 14 Å.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Distance of each amino acid from the average position of phosphorus atoms in the contacting membrane leaflet in the <i>Surface</i> systems.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Snapshot showing cholesterol contacts with the N-terminus of p2 and H2 and H3 of p1 in the <i>Surface</i> model.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Deviations of the <i>Bound</i> model protein dimer conformation from the reference crystal structure of the channel (PDBID: 2M6X).
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Tilt angle conformational landscapes of residues involved in 1-to-1 helix contacts during the last 500 ns of trajectory in the <i>Surface</i> model.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Tilt angle conformational landscapes of residues involved in 1-to-1 helix contacts during the last 200 ns of trajectory in the <i>Sep</i> model.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Suggested mechanism of p7 dimerization at the ER membrane surface, based on results from this study.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Energetics of protein interactions.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Residue contact comparison with reference dimer structure.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Initial simulation coordinates.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Coulomb (electrostatic), Lennard-Jones (hydrophobic), and total interaction energy of interacting monomer helices in each model.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Root mean square deviation measurements of monomers.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

List of protein residues and selected atoms to define the tilt angle vectors.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Description of systems studied.
af: Oluwatoyin Campbell (14392137)
Udgivet: (2025)

Structural Evidence of Interanionic Hydrogen Bonding in Phosphoric Acid Solutions
af: Pyeongeun Kim (9509954)
Udgivet: (2025)

Lipid residency distributions during coarse-grained simulations of YbbAP.
af: Martin B. L. McAndrew (22683641)
Udgivet: (2025)

A Series of Experiments on Criticality and Reflector Reactivity Worth in FCA-XXIII-1 and FCA-XXIV-1 Assemblies Simulating a Small Fast Reactor with a Thick Stainless Steel Reflector
af: Masahiro Fukushima (2249263)
Udgivet: (2025)

Transfer task (pre- and post-test) design and information alignment.
af: Denise Moerel (9080849)
Udgivet: (2025)

The contribution of shared rules to neural information alignment, for the first (A) and second (B) experiment half.
af: Denise Moerel (9080849)
Udgivet: (2025)

The time-course of information alignment, split by first and second experiment half.
af: Denise Moerel (9080849)
Udgivet: (2025)

The time-course of information alignment.
af: Denise Moerel (9080849)
Udgivet: (2025)

Information alignment between the two individuals in each pair.
af: Denise Moerel (9080849)
Udgivet: (2025)

Stimuli, experiment procedure, and behavioral results.
af: Denise Moerel (9080849)
Udgivet: (2025)

Molecular dynamics simulations of YbbAP suggest the periplasmic-side pocket is a lipid-binding site.
af: Martin B. L. McAndrew (22683641)
Udgivet: (2025)

Atomistic molecular dynamics simulation showing partial extraction of a lipid from the bilayer by YbbAP.
af: Martin B. L. McAndrew (22683641)
Udgivet: (2025)

Human Values, Purpose & Meaning 2025 (Dataset)
af: Human Clarity Institute (22464229)
Udgivet: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
af: Neval Yilmaz (1544557)
Udgivet: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
af: Neval Yilmaz (1544557)
Udgivet: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
af: Neval Yilmaz (1544557)
Udgivet: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
af: Neval Yilmaz (1544557)
Udgivet: (2025)

Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain
af: Neval Yilmaz (1544557)
Udgivet: (2025)

Individual memory performance was predicted by a subset of iEEG signal components.
af: Adam J. O. Dede (11554007)
Udgivet: (2025)

Characteristics of patients infected with norovirus GII.
af: Leera Kittigul (22676501)
Udgivet: (2025)

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