Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.

<p>The inner green heatmap represents gene density along the chromosomes, while the adjacent orange histogram illustrates the density of lifted SNP markers.</p>

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Autore principale: Ji-Hun Hwang (17261803) (author)
Altri autori: Sungwoo Lee (1501303) (author), Ju Seok Lee (7526027) (author), Kyung Do Kim (17261797) (author)
Pubblicazione: 2025
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_version_ 1851480439520231424
author Ji-Hun Hwang (17261803)
author2 Sungwoo Lee (1501303)
Ju Seok Lee (7526027)
Kyung Do Kim (17261797)
author2_role author
author
author
author_facet Ji-Hun Hwang (17261803)
Sungwoo Lee (1501303)
Ju Seok Lee (7526027)
Kyung Do Kim (17261797)
author_role author
dc.creator.none.fl_str_mv Ji-Hun Hwang (17261803)
Sungwoo Lee (1501303)
Ju Seok Lee (7526027)
Kyung Do Kim (17261797)
dc.date.none.fl_str_mv 2025-12-05T18:32:33Z
dc.identifier.none.fl_str_mv 10.1371/journal.pone.0335227.g003
dc.relation.none.fl_str_mv https://figshare.com/articles/figure/Comprehensive_visualization_of_the_gene_distribution_and_lifted_SNP_marker_landscape_in_Wm82_v6_/30806012
dc.rights.none.fl_str_mv CC BY 4.0
info:eu-repo/semantics/openAccess
dc.subject.none.fl_str_mv Genetics
Biotechnology
Ecology
Marine Biology
Plant Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
single nucleotide polymorphism
revolutionized crop improvement
resolution genomic analyses
limit genomic resolution
l .) merr
improved genomic resources
glycine max </
enhanced crop improvement
accelerating breeding programs
soybean research community
show successful remapping
extracted flanking sequences
comprehensive genomic resource
snp marker positions
existing genotyping investments
existing genotyping data
927 soybean accessions
div >< p
961 snp markers
v6 reference genomes
soybean (<
updated resource
successful mapping
reference versions
grin accessions
flanking regions
excluding markers
763 markers
multiple mappings
mapping failures
identity alignments
generated using
based alignment
allele mismatches
497 usda
dc.title.none.fl_str_mv Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.
dc.type.none.fl_str_mv Image
Figure
info:eu-repo/semantics/publishedVersion
image
description <p>The inner green heatmap represents gene density along the chromosomes, while the adjacent orange histogram illustrates the density of lifted SNP markers.</p>
eu_rights_str_mv openAccess
id Manara_d528f92be1cad0fb83d2deff237e8e82
identifier_str_mv 10.1371/journal.pone.0335227.g003
network_acronym_str Manara
network_name_str ManaraRepo
oai_identifier_str oai:figshare.com:article/30806012
publishDate 2025
repository.mail.fl_str_mv
repository.name.fl_str_mv
repository_id_str
rights_invalid_str_mv CC BY 4.0
spelling Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.Ji-Hun Hwang (17261803)Sungwoo Lee (1501303)Ju Seok Lee (7526027)Kyung Do Kim (17261797)GeneticsBiotechnologyEcologyMarine BiologyPlant BiologyEnvironmental Sciences not elsewhere classifiedBiological Sciences not elsewhere classifiedsingle nucleotide polymorphismrevolutionized crop improvementresolution genomic analyseslimit genomic resolutionl .) merrimproved genomic resourcesglycine max </enhanced crop improvementaccelerating breeding programssoybean research communityshow successful remappingextracted flanking sequencescomprehensive genomic resourcesnp marker positionsexisting genotyping investmentsexisting genotyping data927 soybean accessionsdiv >< p961 snp markersv6 reference genomessoybean (<updated resourcesuccessful mappingreference versionsgrin accessionsflanking regionsexcluding markers763 markersmultiple mappingsmapping failuresidentity alignmentsgenerated usingbased alignmentallele mismatches497 usda<p>The inner green heatmap represents gene density along the chromosomes, while the adjacent orange histogram illustrates the density of lifted SNP markers.</p>2025-12-05T18:32:33ZImageFigureinfo:eu-repo/semantics/publishedVersionimage10.1371/journal.pone.0335227.g003https://figshare.com/articles/figure/Comprehensive_visualization_of_the_gene_distribution_and_lifted_SNP_marker_landscape_in_Wm82_v6_/30806012CC BY 4.0info:eu-repo/semantics/openAccessoai:figshare.com:article/308060122025-12-05T18:32:33Z
spellingShingle Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.
Ji-Hun Hwang (17261803)
Genetics
Biotechnology
Ecology
Marine Biology
Plant Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
single nucleotide polymorphism
revolutionized crop improvement
resolution genomic analyses
limit genomic resolution
l .) merr
improved genomic resources
glycine max </
enhanced crop improvement
accelerating breeding programs
soybean research community
show successful remapping
extracted flanking sequences
comprehensive genomic resource
snp marker positions
existing genotyping investments
existing genotyping data
927 soybean accessions
div >< p
961 snp markers
v6 reference genomes
soybean (<
updated resource
successful mapping
reference versions
grin accessions
flanking regions
excluding markers
763 markers
multiple mappings
mapping failures
identity alignments
generated using
based alignment
allele mismatches
497 usda
status_str publishedVersion
title Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.
title_full Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.
title_fullStr Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.
title_full_unstemmed Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.
title_short Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.
title_sort Comprehensive visualization of the gene distribution and lifted SNP marker landscape in Wm82.v6.
topic Genetics
Biotechnology
Ecology
Marine Biology
Plant Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
single nucleotide polymorphism
revolutionized crop improvement
resolution genomic analyses
limit genomic resolution
l .) merr
improved genomic resources
glycine max </
enhanced crop improvement
accelerating breeding programs
soybean research community
show successful remapping
extracted flanking sequences
comprehensive genomic resource
snp marker positions
existing genotyping investments
existing genotyping data
927 soybean accessions
div >< p
961 snp markers
v6 reference genomes
soybean (<
updated resource
successful mapping
reference versions
grin accessions
flanking regions
excluding markers
763 markers
multiple mappings
mapping failures
identity alignments
generated using
based alignment
allele mismatches
497 usda