Rice chromosome SNP density for five rice varieties.

Rice chromosome SNP density for five rice varieties.

<p>Dots indicate SNP density in a 100-kb window size for Udai21 (a), Koshihikari (b), Nipponbare (c), Kasalath (d), and IR 58 (e). Colors indicate the 12 chromosomes of the rice genome.</p>

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Bibliografiske detaljer
Hovedforfatter:	Hiroki Ikeda (510280) (author)
Andre forfattere:	Masatsugu Tamura (22683631) (author), Takayuki Ohnishi (816437) (author), Kenta Shirasawa (586327) (author)
Udgivet:	2025
Fag:	Genetics Evolutionary Biology Ecology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified sampling two breeder oryza sativa </ likely parental origins impact variants relative annotate predicted impacts 522 predicted genes superior eating quality excellent eating quality distinctive quality traits carried introgressed aus div >< p curated genome resource aus maternal origin rice </ p aus × koshihikari organelle genome analysis grain quality aus cluster wide analysis rice (< organelle single hybrid origin breeding origin genome resequencing world ’ trace ancestry storage performance starch metabolism results support representative accessions previously designated paternal contribution market value map polymorphisms maintained lines l .) informed crossing identified 1 genomic composition genetic basis enable marker derived segments cultivar uniformity conducted whole chromosomes 1 candidate loci assisted selection assessed within among 37 also referred
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Lignende værker

Principal component analysis of Udai21 and the World Rice Core Collection.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Classification of Udai21 and the World Rice Core Collection based on organelle genome data.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Classification of Udai21 and the World Rice Core Collection based on whole genome sequencing data.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Classification of Udai21 and the World Rice Core Collection based on ddRAD-Seq data.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Category-level summary of genes with potentially distinct functions between Udai21 and Koshihikari.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Statistics for Udai21 pseudomolecule sequences.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Genome assembly and predicted gene BUSCO scores.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Genome assembly statistics for Udai21.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Genes that functions were potentially distincted between Udai21 and Koshihikari.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Genes with high and moderate impact variants between Udai21 and Koshihikari.
af: Hiroki Ikeda (510280)
Udgivet: (2025)

Iodine absorption spectrum of rice starch.
af: Fei Chen (13690)
Udgivet: (2025)

Original data
af: Cunyuan Li (22681823)
Udgivet: (2025)

DMD-PP OBS DP GWAS results
af: Yanjie Li (22685354)
Udgivet: (2025)

The impact of chronic pain on the quality of life of patients attending soshanguve community health centre (CHC), Tshwane district, South Africa
af: Thanyani Pandelani (8218809)
Udgivet: (2025)

Data Sheet 1_Optimizing irrigation efficiency: a case study of the Bakbakti Rice System in Akdala Massif.docx
af: Malis Absametov (22687313)
Udgivet: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025, filtered by the presence of the carbapenem resistance gene, <i>bla</i><sub>NDM-5</sub>.
af: Sophia David (4172902)
Udgivet: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025 from the USA (A) and China (B) filtered by the most frequent ST from each country (ST258 and ST11, respectively).
af: Sophia David (4172902)
Udgivet: (2025)

Proportion of genomes by year from the five critical-level priority pathogens carrying one or more AMR mechanisms for relevant antimicrobial classes, as displayed in the “AMR mechanism proportion over time” panel within amr.watch.
af: Sophia David (4172902)
Udgivet: (2025)

Distribution of pathogen genomes represented in amr.watch as of 31 March 2025.
af: Sophia David (4172902)
Udgivet: (2025)

The interactive amr.watch application here shows an overview from 179,518 <i>E. coli</i> genomes available as of 31 March 2025.
af: Sophia David (4172902)
Udgivet: (2025)

Overview of the Illumina paired-end entries available in the International Nucleotide Sequence Database Collaboration (INSDC) databases as of 31 March 2025.
af: Sophia David (4172902)
Udgivet: (2025)

Curated list of AMR mechanisms by pathogen from AMRFinderPlus that are reported in amr.watch.
af: Sophia David (4172902)
Udgivet: (2025)

QC thresholds applied to the public downloaded genomes.
af: Sophia David (4172902)
Udgivet: (2025)

Fluvastatin inhibits the migration of melanoma A375 cells in a wound healing assay.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Discovery of therapeutic compounds targeting brain metastasis-associated tumor cells (MBMATCs) in high MBM-Index melanoma.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

The MBM-Index as an independent predictor of overall survival (OS) in melanoma.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Identification of melanoma brain metastasis-associated tumor cell subpopulations (MBMATCs).
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Tumor cell-specific transcriptomic features across PTs, ECMs and MBMs.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Immune landscape and CD8<sup>+</sup> T cell transition states in PTs, ECMs and MBMs.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Single cell RNA-seq and snRNA-seq profiling of the PTs (primary melanoma), ECMs (extracranial melanoma metastases) and MBMs (melanoma brain metastases) environments.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Samples & cell type composition in melanoma tumor cells.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Marker genes in melanoma tumor cells across PT, ECM and MBM by sc/snRNA-seq.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

AXL and MITF signature genes.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Samples & cell type composition in sc/snRNA-seq.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Identification of therapeutic drugs with high drug sensitivity for brain metastasis-associated tumor cells (MBMATCs) and high-brain metastasis (MBM) index patients.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

The enriched pathway by all transcripts differentially expressed between MBMATCs and other tumor cells, and between MBM-High and MBM-Low groups.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

The MBM-Index showed no significant correlation with clinicopathological features.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Interaction between MBMATCs and the immune microenvironment.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Pseudotime trajectory analysis of melanoma clusters Mela4 and Mela5.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

Immune cells profiling in PTs, ECMs and MBMs.
af: Jingxin Zeng (18773484)
Udgivet: (2025)

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