Binning tetraploid genomes into four subgenomes using BUSCO genes.

(A) Using a greedy algorithm, we iterated through contigs from largest to smallest, appending a contig to a haplotypic subgenome if the duplication contributed by that contig does not exceed a specified threshold (x axes in the figure). Single-copy BUSC...

وصف كامل

محفوظ في:

التفاصيل البيبلوغرافية
المؤلف الرئيسي:	Amjad Khalaf (22470183) (author)
مؤلفون آخرون:	Chenxi Zhou (369944) (author), Claudia C. Weber (22470186) (author), Emmelien Vancaester (3631018) (author), Ying Sims (12076085) (author), Alex Makunin (10874350) (author), Thomas C. Mathers (3262077) (author), Dominic E. Absolon (21653669) (author), Jonathan M. D. Wood (17797713) (author), Shane A. McCarthy (3170157) (author), Kamil S. Jaron (12153067) (author), Mark Blaxter (50235) (author), Mara K. N. Lawniczak (7832150) (author)
منشور في:	2025
الموضوعات:	Microbiology Genetics Evolutionary Biology Ecology Marine Biology Infectious Diseases Biological Sciences not elsewhere classified quality genome assemblies infected arthropod hosts growing public health chromatin conformation capture obligately intracellular parasites different microsporidian groups xlink "> microsporidia create reference genomes tetraploid genome haplotypes results provide evidence partial microsporidian genomes microsporidia </ p two diploid units microsporidian parasites microsporidian lifecycle tetraploid genomes homeologous genomes complete genomes striking tolerance sexual reproduction sexual cycle segmental duplications scale rearrangements many aspects likely recombine likely organized life project help answer evolution unexplored economic importance diploid lineages dikaryotic cells data indicated darwin tree characterized 14 also observed
الوسوم:	إضافة وسم لا توجد وسوم, كن أول من يضع وسما على هذه التسجيلة!

الوصف
الملخص:	<p><b>(A)</b> Using a greedy algorithm, we iterated through contigs from largest to smallest, appending a contig to a haplotypic subgenome if the duplication contributed by that contig does not exceed a specified threshold (<i>x</i> axes in the figure). Single-copy BUSCO gene completeness is marked by circles and multi-copy BUSCO gene completeness is marked by crosses. A red dashed line denotes the BUSCO completeness score of the unbinned assembly. For <b>(B)</b> idChiSpeb1.µ and <b>(C)</b> ilAceEphe1.µ, we plotted the largest 10 contigs in subgenome 1 with their BUSCO genes, and coloured these genes in the other subgenomes by their positions in subgenome 1. The BUSCO annotations underlying this figure can be found in File Collection 5 at <a href="https://doi.org/10.5281/zenodo.17251512" target="_blank">https://doi.org/10.5281/zenodo.17251512</a>. The figure was generated using gerbil (<a href="https://github.com/Amjad-Khalaf/gerbil" target="_blank">https://github.com/Amjad-Khalaf/gerbil</a>), and manually annotated using <a href="https://inkscape.org/" target="_blank">InkScape</a> (version 1.2.2).</p>

Binning tetraploid genomes into four subgenomes using BUSCO genes.

مواد مشابهة