Adaptive H-REMD simulation algorithm. by Danial Pourjafar-Dehkordi (7165523)

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Pipeline of the interactor algorithm. by Jose Cleydson F. Silva (8685594)

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data by Anthony S. Barente (14035175)

Subjects:

Flowchart of one iteration of the CE-Symm algorithm. by Spencer E. Bliven (6672755)

Subjects:

Average quality scores of the models of the analysis set as a function of the <i>w</i>_<i>SP</i> with which the DOPE potential has been included in the objective function... by Giacomo Janson (8138517)

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

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3D modeling qualities of the AS single-template models built by including DOPE in the objective function of MODELLER. by Giacomo Janson (8138517)

3D modeling qualities of the AM multiple-template models built by including DOPE in the objective function of MODELLER. by Giacomo Janson (8138517)

An expectation-maximization algorithm for finding noninvadable stationary states. by Robert Marsland (8616483)

“…<i>(b)</i> Metabolic byproducts move the relevant unperturbed state from <b>R</b>⁰ (gray ‘x’) to (black ‘x’), which is itself a function of the current environmental conditions. …”

<b>Algorithm Pseudocode</b> by Yibin Zhao (22425801)

Verification of the in-line PS function. by Raul Castañeda (13932971)

(a-b) The LASSO algorithm was used for hyperparameter tuning and identification of the important predictive features. by Devi Soorya Narayana Sasikumar (22331743)

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Immune infiltration analysis by ssGSEA algorithm. by Yubin Xue (1537042)

Demonstration of the combinatorial Hill functions (A and B), and the regulation function (C and D) under the regulation of an activator and a repressor. by Ruihao Li (2908991)

Results of the application of different clustering algorithms to average functional connectivity from healthy subjects. by Francisco Páscoa dos Santos (16510676)

“…Inertia was calculated using the scikit learn module in Python. B) Resulting cluster distance from hierarchical clustering to averaged functional connectivity from healthy subjects, with different numbers of clusters. …”

The results of LASSO regression algorithm. by Xue Fu (549661)

Analysis of the limit cases of the sampling function. by Greta Grassmann (12418506)

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Functional enrichment of 17 gene clusters identified in down-regulated drought tolerant network (dDTN) using MCL algorithm. by Sanchari Sircar (198485)

Immune infiltration analysis by CIBERSORT algorithm. by Lanying Shen (22755930)