Evolutionary algorithm for predicting all-atom protein structure by Mansour, Nashat

“…This algorithm produces a 3D structure of the whole protein, including back-bone and side-chain atoms, by minimizing the energy function associated with the structure. …”
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Computational evluation of protein energy functions by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Evolutionary algorithm for protein structure prediction by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Scatter Search algorithm for Protein Structure Prediction by Mansour, Nashat

“…Given the protein's sequence of Amino Acids (AAs), our algorithm produces a 3D structure that aims to minimise the energy function associated with the structure. …”
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Scatter search for protein structure prediction. (c2008) by Kehyayan, Christine Houry

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Particle swarm optimization based algorithm for protein structure prediction in the 3D HP model. (c2008) by Kanj, Fatima Hassan

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Improved scatter search algorithm for predicting all-atoms protein structures using charmm22 energy model. (c2010) by Ghalayini, Iman Adnan

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Detecting protein complexes in protein interaction networks using Mapper and Graph Convolution Networks by Daou, Leonardo

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Enhanced Inverse Model Predictive Control for EV Chargers: Solution for Rectifier-Side by Ali Sharida (17947847)

Fragment-based computational protein structure prediction by Mansour, Nashat

“…The method is based on a two-phase Scatter Search algorithm that minimizes the energy function. Backbone fragments are extracted from the Robetta server and side chains are, extracted from the Dunbrack Library. …”
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Fragment based protein structure prediction. (c2013) by Terzian, Meghrig Ohanes

“…The results, evaluated on three proteins, show that the algorithm produces tertiary structures with promising root mean square deviations, within reasonable times.…”
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An Introduction to the Special Issue “Protein Glycation in Food, Nutrition, Health and Disease” by Naila Rabbani (291722)

“…The keynote speaker was Lasker Laureate Professor Kazutoshi Mori, speaking on the unfolded protein response, and there were sessions on: glycation in obesity, diabetes, and diabetic complications; glycation in food; glycation through the life course—from maternal bonding to aging; glycation in plants—physiology, function, and food security; glycation in the COVID-19 response; glycation analytics and chemistry; glycation in kidney disease, cancer, and mental health; glycation-related imaging, diagnostic algorithms, and therapeutics; and methods and models in glycation research. …”

Scatter search metaheuristic for homology based protein structure prediction. (c2015) by Stamboulian, Mouses Hrag

“…Determining a protein’s structure is a challenging goal in structural bioinformatics, offering important insight towards understanding the function of a protein. …”
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ANT-colony optimization-direct torque control for a doubly fed induction motor : An experimental validation by Said Mahfoud (17150968)

“…For that reason, this work is focused on the theoretical studies and experimental validation on dSPACE Board DS1104 of the new proposed approach based on PID speed regulation, optimized by the Ant Colony Optimization algorithm (ACO) for DTC, applied to both sides of the Doubly Fed Induction Motor (DFIM), to overcome the previous drawbacks cited at the beginning. …”

AGEomics Biomarkers and Machine Learning—Realizing the Potential of Protein Glycation in Clinical Diagnostics by Naila Rabbani (291722)

“…The term AGEomics is defined as multiplexed quantitation of spontaneous modification of proteins damage and other usually low-level modifications associated with a change of structure and function—for example, citrullination and transglutamination. …”

Particle swarm optimization approach for protein structure prediction in the 3D HP model by Mansour, Nashat

“…Proteins fold, under the influence of several chemical and physical factors, into their 3D structures, which determine their biological functions and properties. …”
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Simultaneous stabilization of multimachine power systems viagenetic algorithms by Abdel-Magid, Y.L.

“…The problem of selecting the parameters of power system stabilizers which simultaneously stabilize this set of plants is converted to a simple optimization problem which is solved by a genetic algorithm with an eigenvalue-based objective function. …”
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Genetic Algorithm Based Simultaneous Eigenvalue Placement Of Power Systems by Abdel Magid, Y.L.

“…The task of selecting the output feedback gains is converted to a simple optimization problem with an eigenvaluebased objective function, which is solved by a genetic algorithm. An objective function is presented allowing the selection of the output feedback gains to place the closed-loop eigenvalues in the left-hand side of a vertical line in the complex s-plane while shifting a specific mode of oscillation to a vertical strip and with bounds on the damping ratio. …”
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Real-Time Implementation of High Performance Control Scheme for Grid-Tied PV System for Power Quality Enhancement Based on MPPC-SVM Optimized by PSO Algorithm by Abdelbasset Krama (16870008)

“…<p dir="ltr">This paper proposes a high performance control scheme for a double function grid-tied double-stage PV system. It is based on model predictive power control with space vector modulation. …”

LNCRI: Long Non-Coding RNA Identifier in Multiple Species by Saleh Musleh (15279190)

“…<p>The pervasive nature of long non-coding RNA (lncRNA) transcription in the mammalian genomes has changed our protein-centric view of genomes. But the identification of lncRNAs is an important task to discover their functional role in species. …”