Computational evluation of protein energy functions by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Evolutionary algorithm for protein structure prediction by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Scatter Search algorithm for Protein Structure Prediction by Mansour, Nashat

“…Given the protein's sequence of Amino Acids (AAs), our algorithm produces a 3D structure that aims to minimise the energy function associated with the structure. …”
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Evolutionary algorithm for predicting all-atom protein structure by Mansour, Nashat

“…This algorithm produces a 3D structure of the whole protein, including back-bone and side-chain atoms, by minimizing the energy function associated with the structure. …”
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Scatter search for protein structure prediction. (c2008) by Kehyayan, Christine Houry

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Particle swarm optimization based algorithm for protein structure prediction in the 3D HP model. (c2008) by Kanj, Fatima Hassan

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Improved scatter search algorithm for predicting all-atoms protein structures using charmm22 energy model. (c2010) by Ghalayini, Iman Adnan

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Logarithmic spiral search based arithmetic optimization algorithm with selective mechanism and its application to functional electrical stimulation system control by Abu Zitar, Raed

“…The proposed algorithm (Ls-AOA) was tested against unimodal and multimodal benchmark functions and demonstrated better capability comparatively using other efficient metaheuristic algorithms reported in the literature. …”

Detecting protein complexes in protein interaction networks using Mapper and Graph Convolution Networks by Daou, Leonardo

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Fragment-based computational protein structure prediction by Mansour, Nashat

“…The 3-dimensional configuration determines a protein’s function. Hence, it is very important to determine the correct structure in order to identify the wrong folding that indicates a disease situation. …”
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Fragment based protein structure prediction. (c2013) by Terzian, Meghrig Ohanes

“…The results, evaluated on three proteins, show that the algorithm produces tertiary structures with promising root mean square deviations, within reasonable times.…”
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Evolution Of Activation Functions for Neural Architecture Search by Nader, Andrew

“…However, to the best of our knowledge, the design of new activation functions has mostly been done by hand. In this work, we propose the use of a self-adaptive evolutionary algorithm that searches for new activation functions using a genetic programming approach, and we compare the performance of the obtained activation functions to ReLU. …”
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An Introduction to the Special Issue “Protein Glycation in Food, Nutrition, Health and Disease” by Naila Rabbani (291722)

“…The keynote speaker was Lasker Laureate Professor Kazutoshi Mori, speaking on the unfolded protein response, and there were sessions on: glycation in obesity, diabetes, and diabetic complications; glycation in food; glycation through the life course—from maternal bonding to aging; glycation in plants—physiology, function, and food security; glycation in the COVID-19 response; glycation analytics and chemistry; glycation in kidney disease, cancer, and mental health; glycation-related imaging, diagnostic algorithms, and therapeutics; and methods and models in glycation research. …”

Evolutionary Algorithms for VLSIMultiobjective Netlist Partitioning by Sait, Sadiq M.

“…A series of experiments are performed to evaluate the efficiency of the algorithms. ISCAS-85/89 benchmark circuits are used and experimental results are reported and analyzed to compare the performance of GA, TS and SimE. …”
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Stochastic evolution algorithm for technology mapping by Al-Mulhem, A.S.

“…Experimental results show that SELF-Map has an overall better performance compared to other algorithms reported in the literature…”
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Scatter search metaheuristic for homology based protein structure prediction. (c2015) by Stamboulian, Mouses Hrag

“…Determining a protein’s structure is a challenging goal in structural bioinformatics, offering important insight towards understanding the function of a protein. …”
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AGEomics Biomarkers and Machine Learning—Realizing the Potential of Protein Glycation in Clinical Diagnostics by Naila Rabbani (291722)

“…The term AGEomics is defined as multiplexed quantitation of spontaneous modification of proteins damage and other usually low-level modifications associated with a change of structure and function—for example, citrullination and transglutamination. …”

Particle swarm optimization approach for protein structure prediction in the 3D HP model by Mansour, Nashat

“…Proteins fold, under the influence of several chemical and physical factors, into their 3D structures, which determine their biological functions and properties. …”
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Evolutionary algorithms for VLSI multi-objective netlist partitioning by Sait, Sadiq M.

“…A series of experiments are performed to evaluate the efficiency of the algorithms. ISCAS-85/89 benchmark circuits are used and experimental results are reported and analyzed to compare the performance of GA, TS and SimE. …”
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A new genetic algorithm approach for unit commitment by Mantawy, A.H.

“…This paper presents a new genetic algorithm approach to solve the unit commitment problem in electric power systems. …”
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