An expectation-maximization algorithm for finding noninvadable stationary states. by Robert Marsland (8616483)

“…<i>(b)</i> Metabolic byproducts move the relevant unperturbed state from <b>R</b>⁰ (gray ‘x’) to (black ‘x’), which is itself a function of the current environmental conditions. …”

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

“…A major challenge in bioprocess simulation is the lack of physical and chemical property databases for biochemicals. A Python-based algorithm was developed for estimating the nonrandom two-liquid (NRTL) model parameters of aqueous binary systems in a straightforward manner from simplified molecular-input line-entry specification (SMILES) strings of substances in a system. …”

Python-based Monte Carlo Simulation Tool by Yangfan Jiang (9372782)

Route for bays29 output by ABSQL algorithm. by Jin Zhang (53297)

“…DSRABSQL builds upon the Q-learning (QL) algorithm. Considering its problems of slow convergence and low accuracy, four strategies within the QL framework are designed first: the weighting function-based reward matrix, the power function-based initial Q-table, a self-adaptive <i>ε-beam</i> search strategy, and a new Q-value update formula. …”

Results of the application of different clustering algorithms to average functional connectivity from healthy subjects. by Francisco Páscoa dos Santos (16510676)

“…<p>A) Resulting cluster inertia from applying the k-means algorithm described in the methods to empirical averaged functional connectivity from healthy subjects, with different numbers of clusters. …”

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

Subjects:

Detailed information of benchmark functions. by Guangwei Liu (181992)

“…The primary objective of this method is to create an effective data dimensionality reduction technique for eliminating redundant, irrelevant, and noisy features within high-dimensional datasets. Drawing inspiration from the Chinese idiom “Chai Lang Hu Bao,” hybrid algorithm mechanisms, and cooperative behaviors observed in natural animal populations, we amalgamate the GWO algorithm, the Lagrange interpolation method, and the GJO algorithm to propose the multi-strategy fusion GJO-GWO algorithm. …”

Sensitivity analysis of the TV-BayesOpt algorithm performance at tracking a periodic temporal drift when the period of the drift is offset from the covariance function period anticipated by the TV-BayesOpt algorithm. by John E. Fleming (8533956)

Performance of PCA and Joint Autoencoder (JAE) denoising algorithms. by Ege Altan (11768156)

Subjects:

Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements by Pascal Wang (10130612)

“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data by Anthony S. Barente (14035175)

Subjects:

Smooth function of sample size. by Muhammad Atif (2575789)

Linear-regression-based algorithms succeed at identifying the correct functional groups in synthetic data, and multi-group algorithms recover more information. by Yuanchen Zhao (12905580)

“…Whiskers show the lowest and highest values within 1.5 × <i>IQR</i> from the first and third quartiles, respectively. …”

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Flowchart for Algorithm 1. by Sagvan Y. Musa (17797611)

Flowchart for Algorithm 2. by Sagvan Y. Musa (17797611)

Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy by Yujin Wu (2901128)

“…Here, we propose a new physics-based scoring function that includes both enthalpic and entropic contributions upon binding by considering the conformational variability of the flexible side chains within the ensemble of docked poses. …”

Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy by Yujin Wu (2901128)

“…Here, we propose a new physics-based scoring function that includes both enthalpic and entropic contributions upon binding by considering the conformational variability of the flexible side chains within the ensemble of docked poses. …”

Ridgeline plot for the probability density function of intracranial pressure predictions derived from the Extreme Gradient Boost algorithm of the arterial and venous pulsation data. by Anmar Abdul-Rahman (688431)

Listed python codes of our algorithm with explanations (Python 3.9 recommended). by Takayuki Niizato (162226)