Computational evluation of protein energy functions by Mansour, Nashat

“…In this project, we carry out a computational evaluation of putative protein energy functions. Our findings show that the CHARMM energy model tends to be more appropriate for ab initio computational techniques that predict protein structures. …”
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Scatter Search algorithm for Protein Structure Prediction by Mansour, Nashat

“…Given the protein's sequence of Amino Acids (AAs), our algorithm produces a 3D structure that aims to minimise the energy function associated with the structure. …”
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Evolutionary algorithm for predicting all-atom protein structure by Mansour, Nashat

“…This algorithm produces a 3D structure of the whole protein, including back-bone and side-chain atoms, by minimizing the energy function associated with the structure. …”
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Scatter search for protein structure prediction. (c2008) by Kehyayan, Christine Houry

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Evolutionary algorithm for protein structure prediction by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Improved scatter search algorithm for predicting all-atoms protein structures using charmm22 energy model. (c2010) by Ghalayini, Iman Adnan

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Synthesis of MVL Functions - Part I: The Genetic Algorithm Approach by Sarif, Bambang

“…The results obtained show that the introduced algorithm outperforms the deterministic technique based on the direct cover approach [3] in terms of the average number of product terms required to realize a given MVL function.…”
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Improved prairie dog optimization algorithm by dwarf mongoose optimization algorithm for optimization problems by Abualigah, Laith

“…In this paper, a novel hybrid optimization algorithm is proposed to solve various benchmark functions, which is called IPDOA. …”
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Particle swarm optimization based algorithm for protein structure prediction in the 3D HP model. (c2008) by Kanj, Fatima Hassan

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Multi-Target Tracking Resources Allocation Using Multi-Agent Modeling and Auction Algorithm by De Rochechouart, Maxence

“…The target dynamics, the sensor selection, and the measurements are simulated by way of an agent-based modeling framework called MESA. The results show an optimum resource allocation with an information-based cost function that is optimized by an Auction Algorithm.…”
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Logarithmic spiral search based arithmetic optimization algorithm with selective mechanism and its application to functional electrical stimulation system control by Abu Zitar, Raed

“…The proposed algorithm (Ls-AOA) was tested against unimodal and multimodal benchmark functions and demonstrated better capability comparatively using other efficient metaheuristic algorithms reported in the literature. …”

Detecting protein complexes in protein interaction networks using Mapper and Graph Convolution Networks by Daou, Leonardo

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Salp swarm algorithm: survey, analysis, and new applications by Abualigah, Laith

“…The behavior of the species when traveling and foraging in the waters is the main source of SSA and MSSA. These two algorithms are put to test on a variety of mathematical optimization functions to see how they behave when it comes to finding the best solutions to optimization problems. …”
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Fragment-based computational protein structure prediction by Mansour, Nashat

“…The 3-dimensional configuration determines a protein’s function. Hence, it is very important to determine the correct structure in order to identify the wrong folding that indicates a disease situation. …”
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Fragment based protein structure prediction. (c2013) by Terzian, Meghrig Ohanes

“…The results, evaluated on three proteins, show that the algorithm produces tertiary structures with promising root mean square deviations, within reasonable times.…”
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Improved Reptile Search Algorithm by Salp Swarm Algorithm for Medical Image Segmentation by Abualigah, Laith

“…Several benchmark images of COVID-19 validate the performance of the proposed RSA-SSA. The results showed that the proposed RSA-SSA outperformed other metaheuristics optimization algorithms published in the literature.…”
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BUC algorithm for iceberg cubes by Nasr, George E.

“…In this paper, we implement the Bottom-Up Computation (BUC) algorithm for computing Iceberg cubes and conduct a sensitivity analysis of BUC with respect to the probability density function of the data. …”
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Iterative Least Squares Functional Networks Classifier by Faisal, Kanaan A

“…The study was achieved with only sets of second-order linearly independent polynomial functions to approximate the neuron functions. The results show that this new framework classifier is reliable, flexible, stable, and achieves a high-quality performance. …”
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An Introduction to the Special Issue “Protein Glycation in Food, Nutrition, Health and Disease” by Naila Rabbani (291722)

“…The keynote speaker was Lasker Laureate Professor Kazutoshi Mori, speaking on the unfolded protein response, and there were sessions on: glycation in obesity, diabetes, and diabetic complications; glycation in food; glycation through the life course—from maternal bonding to aging; glycation in plants—physiology, function, and food security; glycation in the COVID-19 response; glycation analytics and chemistry; glycation in kidney disease, cancer, and mental health; glycation-related imaging, diagnostic algorithms, and therapeutics; and methods and models in glycation research. …”

Scatter search metaheuristic for homology based protein structure prediction. (c2015) by Stamboulian, Mouses Hrag

“…Determining a protein’s structure is a challenging goal in structural bioinformatics, offering important insight towards understanding the function of a protein. …”
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