Computational evluation of protein energy functions by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Evolutionary algorithm for protein structure prediction by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Scatter Search algorithm for Protein Structure Prediction by Mansour, Nashat

“…Given the protein's sequence of Amino Acids (AAs), our algorithm produces a 3D structure that aims to minimise the energy function associated with the structure. …”
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Evolutionary algorithm for predicting all-atom protein structure by Mansour, Nashat

“…This algorithm produces a 3D structure of the whole protein, including back-bone and side-chain atoms, by minimizing the energy function associated with the structure. …”
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A New Penalty Function Algorithm For Convex Quadratic Programming by Bendaya, M.

“…In this paper, we develop an exterior point algorithm for convex quadratic programming using a penalty function approach. …”
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Scatter search for protein structure prediction. (c2008) by Kehyayan, Christine Houry

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Particle swarm optimization based algorithm for protein structure prediction in the 3D HP model. (c2008) by Kanj, Fatima Hassan

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Improved scatter search algorithm for predicting all-atoms protein structures using charmm22 energy model. (c2010) by Ghalayini, Iman Adnan

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Adaptive step-size sign least mean squares by Aldajani, M.A.

“…A powerful adaptation scheme is used to adapt the step-size of the sign function inside the recursion of the sign algorithm. …”
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Detecting protein complexes in protein interaction networks using Mapper and Graph Convolution Networks by Daou, Leonardo

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Fragment-based computational protein structure prediction by Mansour, Nashat

“…The 3-dimensional configuration determines a protein’s function. Hence, it is very important to determine the correct structure in order to identify the wrong folding that indicates a disease situation. …”
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Fragment based protein structure prediction. (c2013) by Terzian, Meghrig Ohanes

“…The results, evaluated on three proteins, show that the algorithm produces tertiary structures with promising root mean square deviations, within reasonable times.…”
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An Introduction to the Special Issue “Protein Glycation in Food, Nutrition, Health and Disease” by Naila Rabbani (291722)

“…The keynote speaker was Lasker Laureate Professor Kazutoshi Mori, speaking on the unfolded protein response, and there were sessions on: glycation in obesity, diabetes, and diabetic complications; glycation in food; glycation through the life course—from maternal bonding to aging; glycation in plants—physiology, function, and food security; glycation in the COVID-19 response; glycation analytics and chemistry; glycation in kidney disease, cancer, and mental health; glycation-related imaging, diagnostic algorithms, and therapeutics; and methods and models in glycation research. …”

Scatter search metaheuristic for homology based protein structure prediction. (c2015) by Stamboulian, Mouses Hrag

“…Determining a protein’s structure is a challenging goal in structural bioinformatics, offering important insight towards understanding the function of a protein. …”
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Tracking analysis of normalized adaptive algorithms by Moinuddin, M.

“…Close agreement between analytical analysis and simulation results is obtained for the case of the NLMS algorithm. The results show that, unlike the stationary case, the steady-state excess-mean-square error is not a monotonically increasing function of the step-size, while the ability of the adaptive algorithm to track the variations in the environment degrades by increasing the frequency offset.…”
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AGEomics Biomarkers and Machine Learning—Realizing the Potential of Protein Glycation in Clinical Diagnostics by Naila Rabbani (291722)

“…The term AGEomics is defined as multiplexed quantitation of spontaneous modification of proteins damage and other usually low-level modifications associated with a change of structure and function—for example, citrullination and transglutamination. …”

Particle swarm optimization approach for protein structure prediction in the 3D HP model by Mansour, Nashat

“…Proteins fold, under the influence of several chemical and physical factors, into their 3D structures, which determine their biological functions and properties. …”
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A Comparative Study of Elgamal Based Cryptographic Algorithms by Haraty, Ramzi A.

“…In this work we implement the classical and modified ElGamal cryptosystem to compare and to test their functionality, reliability and security. To test the security of the algorithms we use a famous attack algorithm called Baby-Step-Giant algorithm which works in the domain of natural integers. …”
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Genetic and heuristic algorithms for regrouping service sites. (c2000) by Tabbara, Hiba

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Convergence analysis of the variable weight mixed-norm LMS-LMFadaptive algorithm by Zerguine, A.

“…In this work, the convergence analysis of the variable weight mixed-norm LMS-LMF (least mean squares-least mean fourth) adaptive algorithm is derived. The proposed algorithm minimizes an objective function defined as a weighted sum of the LMS and LMF cost functions where the weighting factor is time varying and adapts itself so as to allow the algorithm to keep track of the variations in the environment. …”
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