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SHORT- VS LONG-READ SEQUENCING OF SOIL ARTHROPODS
Published 2025“…We found that specimen extraction from soil samples, followed by morphological identification, yielded the highest number of mite species. Despite significantly lower mite richness in the metabarcoding datasets, PacBio datasets (658 bp amplicons) provided more reliable community profiles that aligned strongly with the morphological data. …”
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VEGAWES: variational segmentation on whole exome sequencing for copy number detection
Published 2015“…<p dir="ltr">Copy number variations are important in the detection and progression of significant tumors and diseases. Recently, Whole Exome Sequencing is gaining popularity with copy number variations detection due to low cost and better efficiency. …”
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A Digital DNA Sequencing Engine for Ransomware Analysis using a Machine Learning Network
Published 2020“…The research work proposes a novel detection mechanism for ransomware using machine learning approach using Digital DNA sequencing. The proposed work contains three significant phases: Preprocessing and Feature Selection, DNA Sequence Generation and Ransomware Detection. …”
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Comprehensive whole genome sequence analyses yields novel genetic and structural insights for Intellectual Disability
Published 2017“…We also interrogated regulatory sequence variation for known and hypothesized ID genes and present useful strategies for WGS data analyses for non-coding variation.…”
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Antibiotic resistance patterns and sequencing of class I integron from uropathogenic Escherichia coli in Lebanon
Published 2010“…Five restriction patterns were detected and isolates with the same VR amplicon size had the same restriction pattern. Conclusions: Our data demonstrated that Class I integrons are widely disseminated in Lebanon and showed their importance for the occurrence and transmission of multidrug resistance. …”
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Whole genome sequencing of marine organisms by Oxford Nanopore Technologies: Assessment and optimization of HMW‐DNA extraction protocols
Published 2021“…Our method proved to work significantly better for different marine species regardless of their shape, consistency, and sample preservation, improving Oxford Nanopore Technologies sequencing yield by 39 folds for Spirobranchus sp. and enabling generation of almost 10 GB data per flow cell/run for Chrysaora sp. and Palaemon sp. samples.…”
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The Prevalence and Genetic Spectrum of Familial Hypercholesterolemia in Qatar Based on Whole Genome Sequencing of 14,000 Subjects
Published 2022“…In this study, we combined whole-genome sequencing data from the Qatar Genome Program with deep phenotype data from Qatar Biobank for 14,056 subjects to determine the genetic spectrum and estimate the prevalence of FH in Qatar. …”
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Genetic Susceptibility to Arrhythmia Phenotypes in a Middle Eastern Cohort of 14,259 Whole-Genome Sequenced Individuals
Published 2024“…Methods: Whole-genome sequencing data from 14,259 individuals from the Qatar Biobank were used and contained 47.8% of Arab ancestry, 18.4% of South Asian ancestry, and 4.6% of African ancestry. …”
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Novel algorithms for accurate DNA base-calling
Published 2013“…De-correlation, de-convolution and normalization were implemented as part of the pre-processing stage employed to minimize data imperfections attributed to the nature of the chemical reactions involved in DNA sequencing. …”
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Whole-genome sequencing based molecular characterization of multi-drug resistant isolates of Enterobacter spp. and Klebsiella aerogenes in Lebanon. (c2019)
Published 2019“…The isolates were initially collected and characterized through hsp60 genotyping and 16S rRNA gene sequencing. Pulse field gel electrophoresis (PFGE) and multi-locus sequence typing (MLST) were used to investigate the clonal relatedness and antimicrobial susceptibility was tested and confirmed through in silico analysis. …”
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Scatter search for protein structure prediction. (c2008)
Published 2008Get full text
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masterThesis -
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Effects of the Phantom Shape on the Gradient Artefact of Electroencephalography (EEG) Data in Simultaneous EEG–fMRI
Published 2018“…Moreover, a paired t-test showed that the head-shaped phantom’s and the spherical phantom’s data were significantly different (p < 0.005) from the subjects’ data, whereas the difference between the head-shaped phantom’s and the spherical phantom’s data was not significant (p = 0.07). …”
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Network Packet Transformation Approaches for Intrusion Detection Systems: A Survey
Published 2025“…In a survey of recent popular papers, we identified four main categories of data representations: numerical, pixel-based, sequence-based, and graph-based approaches. …”
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A GHRHR founder mutation causes isolated growth hormone deficiency type IV in a consanguineous Pakistani family
Published 2023“…</i></p><h3>Methods</h3><p dir="ltr">Clinical and radiological studies were performed to determine the phenotypic spectrum and hormonal profile of the disease, while whole-exome sequencing (WES) and Sanger sequencing were performed to identify the disease-causing mutation. …”
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High plasma salivary α-amylase, but not high AMY1 copy number, associated with low obesity rate in Qatari adults: cross-sectional study
Published 2020“…AMY1 CN was estimated form whole genome sequencing data. The associations with obesity prevalence were assessed by linear and logistic regressions. …”