The Use of the Gene Expression Omnibus (GEO) Database to Study Gene Expression and Methylation Patterns in Cases of Preterm Birth and Associated Diseases by Tala Abuarja (17075070)

“…Future work could be done through further understanding of the relevant genes’ function and their pathways and strengthening the validity of the expression patterns in promoting PTB by determining any overlap between the different datasets submitted.…”

Variational Auto Encoder Approach To Find Deferentially Expressed Genes by RAHIMAN, NABIL

“…Recently, deep learning models such as Autoencoder (AE) and Variational Autoencoder (VAE) models are being used to capture hidden patterns from single-cell gene expression data. In this paper, I proposed a framework that is based on a variational autoencoder called BiDiffVAE (Bi-directional Differential Variational Autoencoder) to extract differently expressed genes. …”
Get full text

BioNetApp: An interactive visual data analysis platform for molecular expressions by Ali M. Roumani (18615124)

“…</p><h3>Conclusion</h3><p dir="ltr">BioNetApp has been utilized in a metabolomics study to investigate the metabolite abundance changes in alcohol induced fatty liver, where pair-wise analyses of metabolome concentration revealed correlation networks and interesting patterns in the metabolomics dataset. This study case demonstrates the effectiveness of the BioNetApp software as an interactive visual analysis tool for molecular expression data in systems biology. …”

A SAGE (Serial analysis of gene expression) view of breast tumor progression by Nasser, Selim

“…Very few genes were universally up-regulated in all tumors regardless of their stage and histological grade, indicating a high degree of diversity at the molecular level that likely reflects the clinical heterogeneity characteristic of breast carcinomas. Tumors of different histology type and stage had very distinct gene expression patterns. …”
Get full text
Get full text
Get full text

Combinatorial Expression Rules of Ion Channel Genes in Juvenile Rat (Rattus norvegicus) Neocortical Neurons by Khazen, Georges

“…Using expression data from a subset of twenty-six ion channel genes in ten different neocortical neuronal types, classified according to their electrophysiological properties, morphologies and anatomical positions, we first developed an incremental Support Vector Machine (iSVM) model that prioritizes the predictive value of single and combinations of genes for the rest of the expression pattern. …”
Get full text
Get full text
Get full text

Patterns of Rectal Temperature and Shipping Fever Incidence in Horses Transported Over Long-Distances by Yousuke Maeda (18174976)

“…It has been shown that the incidence of transport-related pyrexia in horses increases with travel time and distance, however, this incidence rate has been expressed as the cumulative number of horses showing pyrexia with the length of travel time during road transport (cumulative percentage), which does not accurately reflect the actual temperature fluctuations and their patterns in relation to shipping fever. …”

Comparative transcriptomics of primary cells in vertebrates by Tanvir Alam (638619)

“…Motif activity analysis showed that both promoters and enhancers are activated by the same transcription factors in different species. An analysis of expression levels of mature miRNAs and of primary miRNAs identified by CAGE revealed that evolutionary old miRNAs are more likely to have conserved expression patterns than young miRNAs. …”

Hyperosmotic Stress Induces a Specific Pattern for Stress Granule Formation in Human-Induced Pluripotent Stem Cells by Salam Salloum-Asfar (656363)

“…Gradient concentrations of NaCl showed a different pattern of SG formation between hiPSCs/IMR90-1 and the nonpluripotent cell line SH-SY5Y. …”

A General Model for Pointing Error of High Frequency Directional Antennas by Mohammad Taghi Dabiri (16904658)

“…For this aim, we first derive the probability density function (PDF) and cumulative distribution functions (CDF) of the pointing error between an unstable transmitter (Tx) and receiver (Rx), that have different antenna patterns and for which the vibrations are not similar in the Yaw and Pitch directions. …”

Predictive Engineering the Membrane Composition of Neocortical Neurons by Khazen, Georges

“…In the first study, I investigate the single-cell gene expression patterns of ion channels in different neuron types and present a combinatorial rule extractor model that reverse engineers the observed expression rules in ten different neocortical neuron types. …”
Get full text
Get full text
Get full text
Get full text

Cell surface proteome characterization of the Candida albicans DSE1 mutant. (c2011) by Zohbi, Racha M.

Get full text
Get full text

Claudin-1, A Double-Edged Sword in Cancer by Ajaz A. Bhat (12984701)

“…Furthermore, we utilized expression data from The Cancer Genome Atlas (TCGA) to investigate the association between CLDN-1 expression and overall survival (OS) in different cancer types. …”

Detection of statistically significant network changes in complex biological networks by Raghvendra Mall (581171)

“…It can happen that due to gene mutations, as for example when cancer progresses, the gene expression network undergoes some amount of localized re-wiring. …”

Digital diplomacy during the first 100 days: How GCC ministries of foreign affairs and ministers tweeted the blockade by Tarfa Al-Mansouri (20362815)

“…In general, states tweet on a daily basis, and the ways in which a sovereign state presents itself online offers an insight into the patterns of representation of state identity, strategy, emotional expression, and recognition of others. …”

Molecular, antibiogram and serological typing of Staphylococcus aureus isolates recovered from Al-Makased hospital in East Jerusalem by Na'was, Tarek

“…Moreover, type 5 isolates showed identical patterns (one isolate differed from the rest with one band only). …”
Get full text
Get full text
Get full text

Divergent wiring of repressive and active chromatin interactions between mouse embryonic and trophoblast lineages by Stefan Schoenfelder (115930)

“…Interactions that are prominent in TSCs are enriched for enhancer–gene contacts involving key TSC transcription factors, as well as TET1, which helps to maintain the expression of TSC-relevant genes. Our work shows that the first developmental cell fate decision results in distinct chromatin conformation patterns establishing lineage-specific contexts involving both repressive and active interactions.…”

Epigenetic alteration of the dopamine transporter gene in alcohol-dependent patients is associated with age by El Maarri, Osman

“…Genetic and environmental factors have been shown to modulate susceptibility to alcohol dependence, and both may act through epigenetic mechanisms that can modulate gene expression, e.g. DNA methylation at CpG sites. Recent studies have suggested that DNA methylation patterns may change over time. …”
Get full text
Get full text
Get full text
Get full text

DNA methylation profiling in Trisomy 21 females with and without breast cancer by Yosra Bejaoui (8552574)

“…We analyzed DNA methylation patterns in Trisomy 21 (T21) individuals without breast cancer (T21-BCF) and DS individuals with breast cancer (T21-BC), using the Infinium Methylation EPIC BeadChip array.…”

DIAPH3 predicts survival of patients with <i>MGMT</i>-methylated glioblastoma by Georges Chehade (18007084)

“…</p><h3>Methods</h3><p dir="ltr">We analyzed <i>DIAPH3</i> expression in glioblastoma samples from the cancer genome atlas (TCGA). …”

Comparison of Whole-class Discussion and Task-based Activity: A Small-Scale Study by Farzaneh, Thoraya Abdullah

Get full text