Software Code for paper on codonGPT and codonGPT-RL حسب Anuj Guruacharya (22332988)

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Table 1_A novel multi-epitope mRNA vaccine against colorectal cancer: in silico design and immune efficacy profiling.docx حسب Lin Wang (11986)

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Software Code for paper on codonGPT and codonGPT-RL حسب Anuj Guruacharya (22332988)

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Table 1_Impact of codon optimization on vip3Aa11 gene expression and insecticidal efficacy in maize.docx حسب Shengyan Li (4028975)

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In silico cloning of the Gag vaccine construct A1) pET-30a(+) plasmid and A2) pcDNA3.1(+) vector. حسب Ava Hashempour (11753878)

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Percentage of combined (MHC I and MHC II) coverage of the selected epitopes (CTL and HTL) of the Gag vaccine in the global population (Generated by https://certmapper.cr.usgs.gov/d... حسب Ava Hashempour (11753878)

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Discontinuous B-cell epitopes on the vaccine construct (1–6) are indicated by the orange region of the Gag vaccine, which depicts each discontinuous B-cell epitope comprising resid... حسب Ava Hashempour (11753878)

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Potential antigenic and immunogenic CTL epitopes. حسب Ava Hashempour (11753878)

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A list of BCL-selected epitopes of the Gag vaccine. حسب Ava Hashempour (11753878)

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Immune simulation outcomes obtained from C-IMMSIM after administration of the Gag vaccine are shown in plots a-j. حسب Ava Hashempour (11753878)

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Fig 6 - حسب Ava Hashempour (11753878)

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Flowchart of Gag vaccine design in this research. حسب Ava Hashempour (11753878)

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Discontinuous epitopes found in the Gag vaccine construct overlap with linear epitopes. حسب Ava Hashempour (11753878)

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A list of conserved domains of the Gag gene sequence of HIV-1. حسب Ava Hashempour (11753878)

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Gag vaccine designed: a) Proposed Gag-HIV vaccine construct; b) Best 3D model of designed Gag vaccine; c) Confirmation of vaccine structure defined by crystallography using the ERR... حسب Ava Hashempour (11753878)

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AutoDock VINA results between the CTL and HTL epitopes of Gag and related alleles. حسب Ava Hashempour (11753878)

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List of links used in this study. حسب Ava Hashempour (11753878)

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Worldwide report of submitted subtypes and CRF sequences of HIV-1. حسب Ava Hashempour (11753878)

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Fig 7 - حسب Ava Hashempour (11753878)

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Potential antigenic and immunogenic HTL epitopes of the Gag vaccine. حسب Ava Hashempour (11753878)

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