Python source code. by Zhaohui Zhu (349376)

MoJoXlab: MATLAB and Python Source Code by Riasat Islam (20726897)

Source codes for cancer diagnosis and prognosis by Fatih Gurcan (18117955)

Subjects:

Supporting data for "Optimisation of Trust in Collaborative Human-Machine Intelligence in Construction" by Hao Chen (9696848)

“…The second folder mirrors the structure of the first, encompassing Scopus data and Python source code used to generate the visualizations featured in Chapter 2. …”

MLP_mod_application_v2.zip by Jian Li (20881226)

“…<p dir="ltr">The python source code for predicting the spatial location of macrophages using single cell dataset. …”

SpaMask: Dissecting spatial domains in spatial transcriptomics by a masked graph attention autoencoder by Yi Liu (17324461)

“…<br>(2) Tutorial for domain identification on 10x Visium human dorsolateral prefrontal cortex (DLPFC) dataset can be found here: Train_151674.ipynb.<br>Python source code, tutorials and datasets can be also accessed at https://github.com/LYxiaotai/SpaMask.…”

SpaMask by Yi Liu (17324461)

“…<br>The domain identification results of the Tutorial Train_151674.ipynb can be found in the folder named data.<br>Python source code and tutorials can be also accessed at https://github.com/LYxiaotai/SpaMask.…”

HaPy-Bug – Human Annotated Python Bug Resolution Dataset by Piotr Przymus (14564009)

“…<p dir="ltr">We present HaPy-Bug, a curated dataset of 793 Python source code commits associated with bug fixes, with each line of code annotated by three domain experts. …”

PTPC-UHT bounce by David Parry (22169299)

“…</p><p dir="ltr">Included files:</p><ul><li>Python source code (<code>PTPC_UHT_bounce.py</code>)</li><li>Parameter sets for representative runs (α,β,Tcrit,V(T)\alpha, \beta, T_{\mathrm{crit}}, V(T)α,β,Tcrit​,V(T))</li><li>Output arrays of trajectories across multiple bounces</li><li>Multi-panel plots (PNG/PDF) for a(t)a(t)a(t), H(t)H(t)H(t), T(t)T(t)T(t), S(t)S(t)S(t), R(t)R(t)R(t), and ρT\rho_TρT​</li></ul><p dir="ltr">This dataset ensures full reproducibility of the PTPC simulations and provides a starting point for independent verification, parameter exploration, and future model extensions.…”

Python Implementation of HSGAdviser Chatbot: AI model for Sustainable Education by Suha Assayed (22454038)

“…<p dir="ltr">This repository contains the Python source code and model implementation for HSGAdviser, an AI speech assistant designed to provide personalized college and career guidance for high school students through conversational AI. …”

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

“…<br><br></p><p dir="ltr">This submission includes a detailed research paper, Python source code, CSV results for inputs from 1 to 100 million, and step-count comparison graphs.…”

Supplementary material for "Euler inversion: Locating sources of potential-field data through inversion of Euler's homogeneity equation" by Leonardo Uieda (97471)

“…</p><h2>License</h2><p dir="ltr">All Python source code (including <code>.py</code> and <code>.ipynb</code> files) is made available under the MIT license. …”

<b>Myelin Basic Protein (MBP) Degradome Foundation Atlas</b> by Axel Petzold (7076261)

“…</li></ul><p dir="ltr">Dataset Contents</p><p dir="ltr">The compressed archive includes:</p><ul><li>MBP_WT.csv — full degradome of wild-type MBP</li><li>MBP_R159K.csv — full degradome of the R159K MBP variant</li><li>MBP_Degradome_All.csv — merged and unified dataset combining all included MBP variants</li><li>Python source code used to generate all peptide fragments and compute peptide features</li><li>README.txt — structured technical documentation</li><li>requirements.txt — software dependency list for reproducibility</li></ul><h3>Data Format</h3><p dir="ltr">All files are provided in CSV (comma-separated values) format and include the following annotated fields:</p><ul><li><code>id</code> — structured peptide identifier (e.g., MBP_WT_10_42)</li><li><code>peptide</code> — amino acid sequence</li><li><code>start</code>, <code>stop</code> — cleavage positions</li><li><code>mz</code> — mass-to-charge ratio</li><li><code>Da</code> — molecular weight</li><li><code>Boman</code> — Boman index</li><li><code>charge</code> — net charge</li><li><code>pI</code> — isoelectric point</li><li><code>hydrophobicity</code></li><li><code>instability_index</code></li><li><code>aliphatic_index</code></li></ul><p dir="ltr">These properties enable integration into R, Python, SAS, Matlab, and machine learning workflows.…”

Albumin Degradome Foundation Atlas by Axel Petzold (7076261)

“…., Skyline, MaxQuant preprocessing, MS/MS spectral libraries)</li></ul></li></ul><h2><b>FAIR Principles</b></h2><p dir="ltr">This dataset is fully aligned with FAIR data standards:</p><ul><li><b>Findable:</b> Rich metadata, stable DOI, search-optimised description</li><li><b>Accessible:</b> Open-access Figshare repository</li><li><b>Interoperable:</b> Standard numeric and CSV formats</li><li><b>Reusable:</b> Transparent, reproducible Python source code included</li></ul><h2><b>Applications</b></h2><p dir="ltr">The Albumin Degradome Foundation Atlas supports research across multiple biomedical domains:</p><ul><li>Biomarker development in liver disease, kidney dysfunction, inflammation, and systemic disorders</li><li>Mass-spectrometry method development</li><li>Computational proteomics and peptide modelling</li><li>Autoimmunity and neo-epitope analysis</li><li>Protein–peptide interaction studies</li><li>Proteolytic pathway mapping and degradomics</li></ul><h2><b>Versioning and Future Work</b></h2><p dir="ltr">This is <b>Version 1</b> of the Albumin Degradome Foundation Atlas. …”