Differences between average F1 obtained for PFP-WGAN and DeepGO-Seq for the GO terms in each height ( and ). by Seyyede Fatemeh Seyyedsalehi (10196767)

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F1 obtained for PFP-WGAN and DeepGO-Seq for GO terms as a function of number of available positive training samples. by Seyyede Fatemeh Seyyedsalehi (10196767)

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Genetic Algorithm for Automated Parameterization of Network Hamiltonian Models of Amyloid Fibril Formation by Gianmarc Grazioli (6752297)

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PATH has state-of-the-art performance versus previous binding affinity prediction algorithms. by Yuxi Long (11024307)

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Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

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MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins by Martin J. Fossat (3714079)

Subjects: “…mathematically exact algorithm…”

Genetic algorithm RfaH designs exhibit greater sequence similarity to NusG-like foldswitching proteins than non-foldswitching proteins. by Lu Hong (399882)

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ADT: A Generalized Algorithm and Program for Beyond Born–Oppenheimer Equations of “<i>N</i>” Dimensional Sub-Hilbert Space by Koushik Naskar (7510592)

“…For the numerical case, user can directly provide <i>ab initio</i> data (adiabatic PESs and NACTs) as input files to this software or can generate those input files through in-built python codes interfacing MOLPRO followed by ADT calculation. …”

gmxapi usage examples. by M. Eric Irrgang (4487278)

Conservation and functional variation across TcdB subtypes. by Michael J. Mansfield (9922934)

Hierarchical communities obtained from CoV-human network using the “community-based” visualization option provided by UNIPred-Web. by Paolo Perlasca (9909695)

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Fig 7 - by Paolo Perlasca (9909695)

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Internal symmetry in crystallin proteins. by Spencer E. Bliven (6672755)

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Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. by Jie Chu (293795)

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Demonstration of the combinatorial Hill functions (A and B), and the regulation function (C and D) under the regulation of an activator and a repressor. by Ruihao Li (2908991)

UPEFinder: A Bioinformatic Tool for the Study of Uncharacterized Proteins Based on Gene Expression Correlation and the PageRank Algorithm by José González-Gomariz (9610967)

“…Although the main goal of this project was first focused on the detection of missing proteins, a new challenge arose from the need to assign biological functions to the uncharacterized human proteins and describe their implications in human diseases. …”

UPEFinder: A Bioinformatic Tool for the Study of Uncharacterized Proteins Based on Gene Expression Correlation and the PageRank Algorithm by José González-Gomariz (9610967)

“…Although the main goal of this project was first focused on the detection of missing proteins, a new challenge arose from the need to assign biological functions to the uncharacterized human proteins and describe their implications in human diseases. …”

UPEFinder: A Bioinformatic Tool for the Study of Uncharacterized Proteins Based on Gene Expression Correlation and the PageRank Algorithm by José González-Gomariz (9610967)

“…Although the main goal of this project was first focused on the detection of missing proteins, a new challenge arose from the need to assign biological functions to the uncharacterized human proteins and describe their implications in human diseases. …”

UPEFinder: A Bioinformatic Tool for the Study of Uncharacterized Proteins Based on Gene Expression Correlation and the PageRank Algorithm by José González-Gomariz (9610967)

“…Although the main goal of this project was first focused on the detection of missing proteins, a new challenge arose from the need to assign biological functions to the uncharacterized human proteins and describe their implications in human diseases. …”

Using ESM-1v as an objective function biases sampling towards RfaHβ-like sequences with lower native sequence recovery. by Lu Hong (399882)

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