Results of the application of different clustering algorithms to average functional connectivity from healthy subjects. by Francisco Páscoa dos Santos (16510676)

“…Inertia was calculated using the scikit learn module in Python. B) Resulting cluster distance from hierarchical clustering to averaged functional connectivity from healthy subjects, with different numbers of clusters. …”

<b>Algorithm Pseudocode</b> by Yibin Zhao (22425801)

Illustration of recording paradigm with PyNoetic’s Stimuli generation and recording module. by Gursimran Singh (575288)

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data by Jean-Christophe Lachance (6619307)

“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”

Search-based testing (Genetic Algorithm) - Chapter 11 of the book "Software Testing Automation" by Saeed Parsa (13893726)

“…</p> <p><br></p> <p>3. Algorithm</p> <p>Below is the main body of the test data generator program:</p> <p>  </p> <p>the main body of a Python program to generate test data for Python functions.…”

Modeling with uniform <i>σ</i> values. by Giacomo Janson (8138517)

Effect of <i>|Δd</i>_<i>n</i><i>|</i> perturbation on 3D modeling. by Giacomo Janson (8138517)

Tunable parameters in stimuli generation module. ^<i>a</i>The fixation cross is displayed once before an experiment starts to help subjects concentrate. <sup><i>b</i></su... by Gursimran Singh (575288)

Integration of Morphoscanner with MDAnalysis, NGLview and Networkx. by Federico Fontana (533670)

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…<p dir="ltr">The <i>zip</i> file contains the code for the functional excitation-inhibition ratio (fE/I) and theta-gamma (θ-γ) phase-amplitude coupling (PAC) analyses described in the paper titled "<b>Hippocampal and cortical activity reflect early </b><b>hyperexcitability</b><b> in an Alzheimer's mouse model</b>" submitted to <i>Brain Communications</i> in April 2025.…”

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> by Shubham Pawar (22471285)

“…</p><p dir="ltr"><b>Input:</b></p><ul><li><code>svi_module/svi_data/svi_info.csv</code> - Image metadata from Step 1</li><li><code>perception_module/trained_models/</code> - Pre-trained models</li></ul><p dir="ltr"><b>Command:</b></p><pre><pre>python -m perception_module.pred \<br> --model-weights .…”

Code by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr"><b>RNA functional analysis</b></p><p dir="ltr">Gene Ontology (GO) analysis was performed using the Metascape website, and gene set enrichment analysis (GSEA) was conducted using the GSEABase and enrichplot packages in R. …”

Core data by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr"><b>RNA functional analysis</b></p><p dir="ltr">Gene Ontology (GO) analysis was performed using the Metascape website, and gene set enrichment analysis (GSEA) was conducted using the GSEABase and enrichplot packages in R. …”

Barro Colorado Island 50-ha plot aerial photogrammetry orthomosaics and digital surface models for 2018-2023: Globally and locally aligned time series. by Vicente Vasquez (13550731)

“…<p dir="ltr"><b>Data Citation</b></p><p dir="ltr">Please cite this dataset as follows:</p><p dir="ltr">Vásquez, Vicente, Milton García, Melvin Hernández, and Helene C. …”