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algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
python function » protein function (Expand Search)
algorithm step » algorithm steps (Expand Search), algorithm used (Expand Search), algorithm etc (Expand Search)
step function » system function (Expand Search), islet function (Expand Search), its function (Expand Search)
algorithm b » algorithm _ (Expand Search), algorithms _ (Expand Search)
b function » _ function (Expand Search), a function (Expand Search), 1 function (Expand Search)
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Comparison of the smooth-index (‘SI’) algorithm with feedback arc set (‘FAS’) sorting.
Published 2024Subjects: -
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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Published 2019“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”
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A detailed process of iterative simulation coupled with bone density algorithm; (a) a function of stimulus and related bone density changes, and (b) iterative calculations of finite element analysis coupled with user’s subroutine for changes in bone density.
Published 2025“…<p>A detailed process of iterative simulation coupled with bone density algorithm; (a) a function of stimulus and related bone density changes, and (b) iterative calculations of finite element analysis coupled with user’s subroutine for changes in bone density.…”
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If datasets are small and/or noisy, linear-regression-based algorithms for identifying functional groups outperform more complex versions.
Published 2024“…More specifically, we plot the <i>R</i><sup>2</sup> of the best linear model minus the <i>R</i><sup>2</sup> of the best quadratic, where “best” refers to the model identified by the corresponding Metropolis algorithm over its finite runtime (10000 steps). (B) Nevertheless, even when the linear algorithm loses in <i>R</i><sup>2</sup>, the grouping it identifies can be a better representation of the underlying ground truth. …”
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