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<b>Opti2Phase</b>: Python scripts for two-stage focal reducer
Published 2025“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”
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Experiment 2D and 5D: Progressive Sample Scaling Algorithm To Solve Many-Affine BBOB Functions.
Published 2024“…</p><p dir="ltr">In the Sample stage, the algorithm generates a combination of equidistant points within the problem's boundaries, where each point corresponds to a variable array with a fixed dimension size. …”
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The SSIM for the different algorithms.
Published 2024“…Different types of noise require different denoising algorithms and techniques to maintain image quality and fidelity. …”
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Linear-regression-based algorithms succeed at identifying the correct functional groups in synthetic data, and multi-group algorithms recover more information.
Published 2024“…<p>(A), (B) Algorithm performance, evaluated over 50 simulated datasets generated as described in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012590#pcbi.1012590.g001" target="_blank">Fig 1</a> with <i>N</i> = 3 true groups, 900 samples and 10% simulated measurement noise. …”
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An expectation-maximization algorithm for finding noninvadable stationary states.
Published 2020“…<i>(b)</i> Metabolic byproducts move the relevant unperturbed state from <b>R</b><sup>0</sup> (gray ‘x’) to (black ‘x’), which is itself a function of the current environmental conditions. …”
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Using synthetic data to test group-searching algorithms in a context where the correct grouping of species is known and uniquely defined.
Published 2024“…The reaction network is assumed to form a linear degradation chain 1 → 2 → ⋯ → <i>N</i> with the end-product concentration (metabolite <i>N</i>, orange) taken as the function of interest (shown with <i>N</i> = 3 as an example). …”
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