Schematic depiction of the updating rules used for the RL-Elo and Sequential Monte Carlo (SMC) algorithms by Greg Jensen (712648)

“…If the choice made was correct, its value is adjusted as a function of how far that value was from its expectation, adjusted by a learning rate δ. …”

Results of DE algorithms with our scheme and original DE algorithms when function dimensionality is set 100. by Haiming Du (6691646)

Results of DE algorithms with our scheme and original DE algorithms when function dimensionality is set 30. by Haiming Du (6691646)

Results of DE algorithms with our scheme and original DE algorithms when function dimensionality is set 50. by Haiming Du (6691646)

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

Comparison of scores obtained by our interpenetration and scoring algorithm (ISA) and ROSETTA for a subset of structures. by Kevin Sawade (16726527)

“…However, our algorithm was 1000 times faster than pyROSETTA (both algorithms have been parallelized on a per-structure basis using the Python package joblib [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1010531#pcbi.1010531.ref069" target="_blank">69</a>]).…”

The ALO algorithm optimization flowchart. by Wenjing Wang (181404)

“…The average running time of the proposed algorithm in Sphere function and Griebank function was 2.67s and 1.64s, respectively. …”

The IALO algorithm solution flowchart. by Wenjing Wang (181404)

“…The average running time of the proposed algorithm in Sphere function and Griebank function was 2.67s and 1.64s, respectively. …”

Values of the objective function and its non-normalized terms , obtained by using different weights in the optimization process. by Roberto Castro-Medina (21484990)

Algorithm of the main experiment targeted to measure the perceptual point spread function (pPSF) treating patients visual system including its optics, physiology and psychology as an integrated imaging system, and patient’s perceptions as its output signal. by Krzysztof Petelczyc (3954203)

“…<p>In the algorithm, the following variables were used: “Ic” denotes the intensity of the central diode (Ic = 40 cd); “DIST(i)” is a randomly sorted list of “D” angular stimuli positions distributed equally as a function of distance from 0.24° to 7.67° from the central point (D = 10), while “i” is an index corresponding to the current distance of a probe diode (“d”); “N” denotes the number of trials for each stimuli position (N = 20); “s” denotes the perceptual brightness value transformed to diode luminous intensity by an array “I(s)” corresponds to the table “scale (level)” determined by the algorithm presented in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0306331#pone.0306331.g003" target="_blank">Fig 3</a>; “cnt” is a counter of trials for the current probe diode’s distance, array threshold (d), and slope (d), i.e., it denotes the intensity of the single point of the pPSF and its uncertainty. …”

Algorithm pseudocode. by Cheng-jie Chen (22272090)

“…On the basis of the Retinex model, multi-level decomposition of brightness is carried out, and different filtering parameters are set to obtain multiple illumination and reflection images with different scale information; Using exponential function and Sigmoid function to process reflection images and illumination images separately, reducing external interference on images of different scales, and solving the difficulty of enhancing images with uneven illumination, high noise, low illumination, and loss of details. …”

Benchmarking functions. by Guilin Yang (583364)

“…Introducing nonlinear convergence factors based on positive cut functions to changing the convergence of algorithms, the early survey capabilities and later development capabilities of the algorithm are balanced. …”

The results of Friedman and Kruskal-Wallis tests for DEGH and its variants with different <i>CR</i> values. by Xuxu Zhong (10099054)

Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling by Giacomo Janson (8138517)

“…This program implements the “modeling by satisfaction of spatial restraints” strategy and its core algorithm has not been altered significantly since the early 1990s. …”

Efficient algorithms to discover alterations with complementary functional association in cancer by Rebecca Sarto Basso (6728921)

“…We provide analytic evidence of the effectiveness of UNCOVER in finding high-quality solutions and show experimentally that UNCOVER finds sets of alterations significantly associated with functional targets in a variety of scenarios. In particular, we show that our algorithms find sets which are better than the ones obtained by the state-of-the-art method, even when sets are evaluated using the statistical score employed by the latter. …”

Mean and standard deviation of RBF classifier performance across different training algorithms with cross-validation. by Mohammad Hossein Hadizadeh Isfahani (22634016)

Mean and standard deviation of MLP classifier performance across different training algorithms with cross-validation. by Mohammad Hossein Hadizadeh Isfahani (22634016)

Bioinformatics pipeline for circadian function. by Patrick B. Schwartz (14782608)

“…CYCLOPS (cyclic ordering by periodic structure) is an algorithm that can identify rhythmic (longitudinal) data from population data where sample time acquisition is unknown. …”

Concept of the ISEEML classifier and its main characteristics. by Artem S. Kasianov (8783363)