Similarity between the allegiance matrices of the multiplex SC-FC graph, the FC graph alone, and the SC graph alone, as a function of the topological scale for the group. حسب Arian Ashourvan (6685232)

Data from: Structural and Functional Analysis of Multi-interface Domains حسب ZHAO Liang (8657694)

"…This work applies graph theory and algorithms to discover fingerprints for the multiple interfaces of a domain and to establish associations between the interfaces and functions, based on a huge set of multi-interface proteins from PDB. …"

Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy حسب Yujin Wu (2901128)

"…We also describe a novel hybrid searching algorithm that combines both molecular dynamics (MD)-based simulated annealing and genetic algorithm crossovers to address the enhanced sampling of the increased search space. …"

Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy حسب Yujin Wu (2901128)

"…We also describe a novel hybrid searching algorithm that combines both molecular dynamics (MD)-based simulated annealing and genetic algorithm crossovers to address the enhanced sampling of the increased search space. …"

Significantly dysregulated proteins (|log2FC | ≤  0.5, adj. p-value ≤  0.05) in SCA1 (805 proteins). حسب Aimilia-Christina Vagiona (17584758)

الموضوعات:

Fold Change (FC) in protein levels among non-survivors compared to survivors in 40 CERES participants. حسب Yue Ren (1311615)

الموضوعات:

Illustration of the perturbation of the protein relationship network and NECARE algorithm. حسب Jiajun Qiu (4684921)

Rosetta energy functions for membrane proteins cannot identify the inward-facing conformation of PfMATE. حسب Diego del Alamo (9925083)

Venn diagrams showing overlap of the total of overrepresented/underrepresented kinases for both cohorts. حسب Erica A. K. DePasquale (11851483)

الموضوعات:

Dynamical comparison between Drosha and Dicer reveals functional motion similarities and dissimilarities حسب Rotem Aharoni (8108177)

"…Since dynamics is essential for protein function, a comparison at their dynamics level is fundamental for a complete understanding of the overall relations between these proteins. …"

DataSheet1_The evolution of flexibility and function in the Fc domains of IgM, IgY, and IgE.pdf حسب Rosaleen A. Calvert (10039787)

"…</p>Results and discussion<p>We analysed the scattering curves in terms of contributions from a pool of variously bent models chosen by a non-negative linear least-squares algorithm and found that the four proteins form a series in which the proportion of acutely bent material increases: IgM-Fc < IgY-Fc < plIgE-Fc < huIgE-Fc. …"

Local topological scales of hierarchical community organization in structural and functional brain graphs. حسب Arian Ashourvan (6685232)

MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins حسب Martin J. Fossat (3714079)

الموضوعات: "…mathematically exact algorithm…"

Comparison between different PSO algorithms on function 4–6. حسب Lai Xu (1828831)

Comparison between different PSO algorithms on function 1–3. حسب Lai Xu (1828831)

Comparison between different PSO algorithms on function 7–8. حسب Lai Xu (1828831)

Demonstration of the combinatorial Hill functions (A and B), and the regulation function (C and D) under the regulation of an activator and a repressor. حسب Ruihao Li (2908991)

Pseudocode of the RPath algorithm. حسب Daniel Domingo-Fernández (5432273)

"…., <i>lmax)</i>, the core function of the algorithm, <i>is_drug_prioritized</i>, returns whether a drug should be prioritized or not. …"

Bridge: A Graph-Based Algorithm to Analyze Dynamic H‑Bond Networks in Membrane Proteins حسب Malte Siemers (5127779)

"…Membrane proteins that function as transporters or receptors must communicate with both sides of the lipid bilayer in which they sit. …"

Computational predictions in the protein-protein interface of the c-Raf-RBD:KRas complex for c-Raf-RBD(RK) and the novel variant c-Raf-RBD(RKY). حسب Anna U. Lowegard (8051597)

الموضوعات: