Comparison of the improved LRM and RM results. by YueSheng Jiang (19267984)

Result charts for different window sizes. by YueSheng Jiang (19267984)

Reliability of the optimized frequency parameters and sFC matrix edges in the high-dimensional cases as well as of the GoF. by Kevin J. Wischnewski (21354521)

PyNoetic’s classification module supports a range of popular and widely used ML classification models with just a single line of function call. by Gursimran Singh (575288)

Subjects:

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data by Jean-Christophe Lachance (6619307)

“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”

Python code for a rule-based NLP model for mapping circular economy indicators to SDGs by Zahir Barahmand (18008947)

“…The package includes:</p><ul><li>The complete Python codebase implementing the classification algorithm</li><li>A detailed manual outlining model features, requirements, and usage instructions</li><li>Sample input CSV files and corresponding processed output files to demonstrate functionality</li><li>Keyword dictionaries for all 17 SDGs, distinguishing strong and weak matches</li></ul><p dir="ltr">These materials enable full reproducibility of the study, facilitate adaptation for related research, and offer transparency in the methodological framework.…”

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

Design and implementation of DelaySSA. The input data for DelaySSA are reaction information, initial states, parameters and delays. Combining these into the simulation function, th... by Ziyan Jin (21021976)

Modeling with uniform <i>σ</i> values. by Giacomo Janson (8138517)

Effect of <i>|Δd</i>_<i>n</i><i>|</i> perturbation on 3D modeling. by Giacomo Janson (8138517)

Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling by Giacomo Janson (8138517)

“…This program implements the “modeling by satisfaction of spatial restraints” strategy and its core algorithm has not been altered significantly since the early 1990s. …”

Example of use of the slightly off-axis strategies. by Raul Castañeda (13932971)

Example of the fully-compensated phase reconstruction package for off-axis DHM holograms recorded in telecentric configuration. by Raul Castañeda (13932971)

Comparison of edge detector and CHT in detecting droplets. by Manibarathi Vaithiyanathan (6655274)

<b>Algorithm Pseudocode</b> by Yibin Zhao (22425801)

Python code, input data, and outputs of Fourier analysis and Dynamic Time Warping from McGlasson et al. by Riley McGlasson (13876874)

“…</p> <h4><strong>Python Function Files:</strong></h4> <p>radarfuncs.py: Holds three functions used for FFT and DTW analysis.…”

Table_1_NeuroRA: A Python Toolbox of Representational Analysis From Multi-Modal Neural Data.pdf by Zitong Lu (9913770)

Presentation_2_NeuroRA: A Python Toolbox of Representational Analysis From Multi-Modal Neural Data.pdf by Zitong Lu (9913770)

Table_2_NeuroRA: A Python Toolbox of Representational Analysis From Multi-Modal Neural Data.pdf by Zitong Lu (9913770)